Variant report

Variant	rs17630683
Chromosome Location	chr7:140800262-140800263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12703284	0.80[ASN][1000 genomes]
rs1961288	0.80[ASN][1000 genomes]
rs4726225	0.80[ASN][1000 genomes]
rs488795	0.82[ASN][1000 genomes]
rs490810	0.80[ASN][1000 genomes]
rs512177	0.80[ASN][1000 genomes]
rs512509	0.82[ASN][1000 genomes]
rs528957	0.82[ASN][1000 genomes]
rs533441	0.80[ASN][1000 genomes]
rs544081	0.82[ASN][1000 genomes]
rs545121	0.80[ASN][1000 genomes]
rs557962	0.80[ASN][1000 genomes]
rs55971084	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs569584	0.82[ASN][1000 genomes]
rs579518	0.80[ASN][1000 genomes]
rs6464284	0.80[ASN][1000 genomes]
rs801155	0.82[ASN][1000 genomes]
rs801159	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889248	chr7:140754785-140809205	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140783400-140800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:140783400-140801400	Weak transcription	Fetal Brain Male	brain
3	chr7:140794400-140801200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:140794400-140801400	Weak transcription	Brain Germinal Matrix	brain
5	chr7:140795000-140801600	Weak transcription	Fetal Brain Female	brain
6	chr7:140796000-140802400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:140796000-140803800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:140796200-140803600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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