Variant report

Variant	rs38719
Chromosome Location	chr7:140693894-140693895
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10240888	0.85[EUR][1000 genomes]
rs10488098	0.89[CEU][hapmap]
rs1089264	0.98[EUR][1000 genomes]
rs13438609	0.82[EUR][1000 genomes]
rs1476868	0.89[CEU][hapmap]
rs17622717	0.90[CEU][hapmap]
rs17623204	0.89[CEU][hapmap]
rs17695341	0.90[CEU][hapmap]
rs17695623	0.90[CEU][hapmap]
rs17695707	0.90[CEU][hapmap]
rs17695935	0.89[CEU][hapmap]
rs17695995	0.90[CEU][hapmap]
rs1968140	0.89[CEU][hapmap]
rs2079827	0.93[EUR][1000 genomes]
rs246739	0.93[EUR][1000 genomes]
rs2688430	0.98[EUR][1000 genomes]
rs38715	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs38717	1.00[EUR][1000 genomes]
rs38718	1.00[EUR][1000 genomes]
rs38720	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs38722	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs38723	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs38726	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs38730	1.00[EUR][1000 genomes]
rs38731	1.00[EUR][1000 genomes]
rs38734	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs38736	0.93[EUR][1000 genomes]
rs38739	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs38740	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs56347011	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58901822	0.93[EUR][1000 genomes]
rs60164573	0.81[EUR][1000 genomes]
rs62485391	0.88[EUR][1000 genomes]
rs62485451	0.85[EUR][1000 genomes]
rs62485452	0.93[EUR][1000 genomes]
rs62485453	0.93[EUR][1000 genomes]
rs7810757	0.89[CEU][hapmap]
rs801117	0.98[EUR][1000 genomes]
rs801121	0.93[EUR][1000 genomes]
rs801127	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140692600-140698000	Weak transcription	Fetal Intestine Large	intestine
2	chr7:140693000-140697800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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