Variant report

Variant	rs10953203
Chromosome Location	chr7:96767557-96767558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96722317..96724979-chr7:96765637..96768618,2	MCF-7	breast:
2	chr7:96767307..96769566-chr7:96804209..96806523,2	K562	blood:
3	chr7:96765006..96767658-chr7:96799778..96802504,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10256036	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953204	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976587	0.94[EUR][1000 genomes]
rs11984368	0.96[EUR][1000 genomes]
rs1199287	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1199288	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12670377	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2037782	0.92[EUR][1000 genomes]
rs56074841	0.96[EUR][1000 genomes]
rs60195718	0.94[EUR][1000 genomes]
rs62499465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62499469	0.96[EUR][1000 genomes]
rs62499470	0.95[EUR][1000 genomes]
rs62499471	0.96[EUR][1000 genomes]
rs62499475	0.94[EUR][1000 genomes]
rs62499477	0.94[EUR][1000 genomes]
rs62499478	0.93[EUR][1000 genomes]
rs62499479	0.93[EUR][1000 genomes]
rs73233828	0.80[EUR][1000 genomes]
rs73233831	0.96[EUR][1000 genomes]
rs73233843	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96747600-96768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:96747800-96768200	Weak transcription	Aorta	Aorta
3	chr7:96748400-96768200	Weak transcription	Right Ventricle	heart
4	chr7:96748400-96768400	Weak transcription	Psoas Muscle	Psoas
5	chr7:96749000-96768200	Weak transcription	Right Atrium	heart
6	chr7:96749200-96768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:96749400-96768000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:96749400-96768200	Weak transcription	Primary T cells from cord blood	blood
9	chr7:96755000-96768000	Weak transcription	Adipose Nuclei	Adipose
10	chr7:96756200-96767800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:96756600-96768000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:96756600-96768000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:96759200-96768400	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:96760000-96768000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:96760000-96768000	Weak transcription	Spleen	Spleen
16	chr7:96760000-96768200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:96760000-96768200	Weak transcription	Esophagus	oesophagus
18	chr7:96760200-96767800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr7:96760200-96768000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:96760200-96768200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:96760400-96768000	Weak transcription	Liver	Liver
22	chr7:96760400-96768000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr7:96760400-96768200	Weak transcription	Gastric	stomach
24	chr7:96760400-96768200	Weak transcription	Left Ventricle	heart
25	chr7:96760400-96796800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:96762800-96768200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:96762800-96768600	Weak transcription	Fetal Lung	lung
28	chr7:96764000-96768000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:96764400-96773000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:96764800-96767800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:96764800-96768200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr7:96765000-96768000	Weak transcription	Fetal Intestine Large	intestine
33	chr7:96765000-96768600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:96765400-96772200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr7:96766000-96769800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
36	chr7:96766400-96767600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:96766400-96767600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:96766400-96768000	Weak transcription	Ovary	ovary
39	chr7:96766400-96769200	ZNF genes & repeats	Dnd41	blood
40	chr7:96766400-96773000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr7:96766600-96767600	Strong transcription	K562	blood
42	chr7:96766600-96769600	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr7:96766600-96769800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:96766800-96768400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr7:96766800-96772000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
46	chr7:96767000-96769200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:96767000-96769400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
48	chr7:96767000-96771000	Weak transcription	A549	lung
49	chr7:96767200-96768800	ZNF genes & repeats	Fetal Stomach	stomach
50	chr7:96767200-96769200	ZNF genes & repeats	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links