Variant report

Variant	rs11976587
Chromosome Location	chr7:96797808-96797809
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10256036	0.93[EUR][1000 genomes]
rs10269566	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10499934	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10953203	0.94[EUR][1000 genomes]
rs10953204	0.93[EUR][1000 genomes]
rs11984368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1199287	0.95[EUR][1000 genomes]
rs1199288	0.95[EUR][1000 genomes]
rs12670377	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs2037782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56074841	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60195718	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62499465	0.94[EUR][1000 genomes]
rs62499469	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62499470	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62499471	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62499474	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62499475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62499477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62499478	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62499479	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6465569	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs73233828	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73233831	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73233843	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96769000-96799600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:96769000-96811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:96771400-96818200	Weak transcription	A549	lung
4	chr7:96789400-96812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:96789400-96815400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:96789400-96818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:96789600-96805200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:96789600-96818400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:96790400-96814600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:96790600-96811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:96790600-96811600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr7:96790600-96813600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:96790600-96813600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:96791000-96798000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr7:96791800-96811600	Weak transcription	Adipose Nuclei	Adipose
16	chr7:96796000-96811800	Weak transcription	K562	blood
17	chr7:96796400-96798000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr7:96796800-96798000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
19	chr7:96797400-96798200	Weak transcription	Lung	lung
20	chr7:96797400-96801400	Weak transcription	NHEK	skin
21	chr7:96797400-96811200	Weak transcription	HepG2	liver
22	chr7:96797400-96814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:96797400-96814800	Weak transcription	Pancreas	Pancrea
24	chr7:96797400-96816400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:96797400-96816600	Weak transcription	Aorta	Aorta
26	chr7:96797600-96798400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:96797600-96810800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:96797600-96811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:96797600-96811800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:96797600-96818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:96797800-96798000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:96797800-96799800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:96797800-96816000	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links