Variant report

Variant	rs10953568
Chromosome Location	chr7:108012397-108012398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10487850	0.89[EUR][1000 genomes]
rs10953563	0.86[EUR][1000 genomes]
rs11763042	0.86[EUR][1000 genomes]
rs11769966	0.86[EUR][1000 genomes]
rs12538050	0.82[EUR][1000 genomes]
rs12673676	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13221333	0.91[EUR][1000 genomes]
rs13242951	0.85[EUR][1000 genomes]
rs13243381	0.84[EUR][1000 genomes]
rs16872495	0.88[EUR][1000 genomes]
rs17155485	0.86[EUR][1000 genomes]
rs17155518	0.85[EUR][1000 genomes]
rs17155522	0.88[EUR][1000 genomes]
rs2300024	0.80[EUR][1000 genomes]
rs2300030	0.90[EUR][1000 genomes]
rs6956163	0.85[EUR][1000 genomes]
rs7778203	0.91[EUR][1000 genomes]
rs969708	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108004000-108016600	Weak transcription	Pancreas	Pancrea
2	chr7:108004400-108016600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:108009200-108012600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:108009400-108013200	Weak transcription	HUVEC	blood vessel
5	chr7:108009400-108016600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:108010800-108012400	Weak transcription	A549	lung
7	chr7:108011200-108012800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:108011800-108015800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:108012200-108012800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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