Variant report

Variant	rs109536
Chromosome Location	chr9:136889987-136889988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr9:136889725-136890667	H1-hESC	embryonic stem cell:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890178-136890189 chr9:136890193-136890204 chr9:136890465-136890474
2	CHD2	chr9:136889973-136890692	GM12878	blood:	n/a	n/a
3	POLR2A	chr9:136889800-136891179	H1-neurons	neurons:	n/a	n/a
4	IRF1	chr9:136889955-136890717	K562	blood:	n/a	n/a
5	POLR2A	chr9:136889710-136890868	HUVEC	blood vessel:	n/a	n/a
6	MXI1	chr9:136889604-136891651	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr9:136889897-136890120	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr9:136889913-136890221	ECC-1	luminal epithelium:	n/a	n/a
9	ZNF263	chr9:136889516-136890699	HEK293-T-REx	kidney:	n/a	chr9:136890183-136890204 chr9:136890219-136890240 chr9:136890147-136890168
10	SP1	chr9:136889794-136890846	A549	lung:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890711-136890725 chr9:136890178-136890189 chr9:136890193-136890204 chr9:136890465-136890474
11	EGR1	chr9:136889916-136890619	K562	blood:	n/a	n/a
12	ZNF143	chr9:136889920-136890665	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAZ	chr9:136889906-136891221	K562	blood:	n/a	chr9:136890674-136890683
14	SRF	chr9:136889799-136890922	HCT-116	colon:	n/a	n/a
15	POLR2A	chr9:136889827-136890247	U87	brain:	n/a	n/a
16	EGR1	chr9:136889910-136890687	K562	blood:	n/a	n/a
17	POLR2A	chr9:136889973-136890071	MCF-7	breast:	n/a	n/a
18	POLR2A	chr9:136889976-136890764	HUVEC	blood vessel:	n/a	n/a
19	ZNF143	chr9:136889986-136890715	Hela-S3	cervix:	n/a	n/a
20	EP300	chr9:136889984-136891044	K562	blood:	n/a	n/a
21	POLR2A	chr9:136889909-136890129	SK-N-SH	brain:	n/a	n/a
22	BRCA1	chr9:136889902-136890644	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr9:136889849-136890263	SK-N-SH	brain:	n/a	n/a
24	POLR2A	chr9:136889850-136891672	H1-neurons	neurons:	n/a	n/a
25	TBP	chr9:136889949-136890650	H1-hESC	embryonic stem cell:	n/a	n/a
26	SP1	chr9:136889734-136890955	HCT-116	colon:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890711-136890725 chr9:136890178-136890189 chr9:136890193-136890204 chr9:136890465-136890474
27	POLR2A	chr9:136889910-136890873	HUVEC	blood vessel:	n/a	n/a
28	POLR2A	chr9:136889973-136890155	Gliobla	brain:	n/a	n/a
29	POLR2A	chr9:136889889-136891049	Raji	blood:	n/a	n/a
30	SP1	chr9:136889928-136890682	GM12878	blood:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890178-136890189 chr9:136890193-136890204 chr9:136890465-136890474
31	MAZ	chr9:136889944-136891213	GM12878	blood:	n/a	chr9:136890674-136890683
32	NFYA	chr9:136889968-136890633	Hela-S3	cervix:	n/a	n/a
33	TAF1	chr9:136889866-136890255	H1-hESC	embryonic stem cell:	n/a	n/a
34	SIN3A	chr9:136889892-136891366	H1-hESC	embryonic stem cell:	n/a	n/a
35	SP1	chr9:136889944-136890710	GM12878	blood:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890178-136890189 chr9:136890193-136890204 chr9:136890465-136890474
36	POLR2A	chr9:136889769-136890950	SK-N-MC	brain:	n/a	n/a
37	SP1	chr9:136889862-136890680	H1-hESC	embryonic stem cell:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890178-136890189 chr9:136890193-136890204 chr9:136890465-136890474
38	POLR2A	chr9:136889929-136890953	K562	blood:	n/a	n/a
39	MAZ	chr9:136889969-136891150	Hela-S3	cervix:	n/a	chr9:136890674-136890683
40	MAX	chr9:136889915-136891132	MCF-7	breast:	n/a	chr9:136890674-136890683
41	JUND	chr9:136889925-136890142	H1-hESC	embryonic stem cell:	n/a	n/a
42	SP4	chr9:136889807-136890731	H1-hESC	embryonic stem cell:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890178-136890189 chr9:136890193-136890204
43	ZNF263	chr9:136889927-136890603	K562	blood:	n/a	chr9:136890183-136890204 chr9:136890219-136890240 chr9:136890147-136890168
44	GTF2F1	chr9:136889984-136890630	Hela-S3	cervix:	n/a	n/a
45	MXI1	chr9:136889954-136891862	IMR90	lung:	n/a	n/a
46	MAZ	chr9:136889987-136891093	HepG2	liver:	n/a	chr9:136890674-136890683
47	POLR2A	chr9:136889838-136890115	ProgFib	skin:	n/a	n/a
48	MYC	chr9:136889750-136890698	H1-hESC	embryonic stem cell:	n/a	chr9:136890674-136890683
49	SP1	chr9:136889731-136890903	HCT-116	colon:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890711-136890725 chr9:136890178-136890189 chr9:136890193-136890204 chr9:136890465-136890474
50	SP4	chr9:136889869-136890722	H1-hESC	embryonic stem cell:	n/a	chr9:136890211-136890222 chr9:136890145-136890156 chr9:136890229-136890240 chr9:136890178-136890189 chr9:136890193-136890204

No.	Distal block	Cell Line	Cell type
1	chr9:136889824..136891845-chr9:137000522..137002324,2	K562	blood:
2	chr9:136857193..136859735-chr9:136888278..136891342,4	MCF-7	breast:
3	chr9:136888954..136894255-chr9:136931474..136935040,9	K562	blood:
4	chr9:136888457..136893834-chr9:136930854..136936517,11	MCF-7	breast:
5	chr9:136889870..136892902-chr9:136892951..136894891,4	MCF-7	breast:
6	chr9:136889586..136891747-chr9:136893297..136895999,4	MCF-7	breast:
7	chr9:136889377..136892336-chr9:136904315..136908613,4	MCF-7	breast:
8	chr9:136888985..136892489-chr9:136929943..136933995,5	K562	blood:
9	chr9:136888792..136891646-chr9:137000403..137003499,3	MCF-7	breast:
10	chr9:136856335..136860882-chr9:136888369..136892368,8	MCF-7	breast:
11	chr9:136889327..136891768-chr9:136933108..136935436,5	MCF-7	breast:

Variant related genes	Relation type
LINC00094	TF binding region
ENSG00000235106	Chromatin interaction
ENSG00000169925	Chromatin interaction
ENSG00000196363	Chromatin interaction
ENSG00000160293	Chromatin interaction
ENSG00000273249	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10993894	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10993895	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124317	0.82[ASN][1000 genomes]
rs2073818	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2157770	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2427946	0.81[ASN][1000 genomes]
rs2427949	0.81[ASN][1000 genomes]
rs2427951	0.81[ASN][1000 genomes]
rs2428087	0.82[ASN][1000 genomes]
rs2506699	0.81[ASN][1000 genomes]
rs2506700	0.81[ASN][1000 genomes]
rs2519078	0.87[ASN][1000 genomes]
rs2519081	0.82[ASN][1000 genomes]
rs2519831	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2520094	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2520095	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2520096	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2520099	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2810480	0.98[ASN][1000 genomes]
rs2810489	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2810491	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3094339	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs378740	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs379417	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs379471	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs386770	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs392134	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs401826	0.91[EUR][1000 genomes]
rs408307	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs410876	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs416390	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs433402	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs433994	0.85[ASN][1000 genomes]
rs437182	0.98[ASN][1000 genomes]
rs443876	0.91[ASN][1000 genomes]
rs448918	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs455073	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs455381	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs456205	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs456207	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs456793	0.97[ASN][1000 genomes]
rs457084	0.88[ASN][1000 genomes]
rs457420	0.89[ASN][1000 genomes]
rs459571	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs460154	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs460888	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs461462	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs464024	0.90[ASN][1000 genomes]
rs464826	0.82[ASN][1000 genomes]
rs465535	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs465724	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs466681	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs467303	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs467369	0.84[ASN][1000 genomes]
rs467379	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs467387	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs482481	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55923934	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479631	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv894134	chr9:136839840-136892523	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv894135	chr9:136839840-136927657	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv894136	chr9:136839840-136938961	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv894137	chr9:136839840-136950691	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv825148	chr9:136848471-137025632	Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
15	nsv894139	chr9:136863932-136950691	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
16	nsv894140	chr9:136865879-136927657	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv894141	chr9:136865879-136938961	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
18	nsv894142	chr9:136870787-136906752	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
19	nsv466627	chr9:136870787-136938961	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
20	nsv615774	chr9:136870787-136938961	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
21	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
22	nsv894143	chr9:136874066-136906752	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
23	nsv894144	chr9:136874066-136909261	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
24	nsv894145	chr9:136874066-136925451	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
25	nsv894146	chr9:136874066-136938961	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
26	nsv894147	chr9:136874066-136950691	Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
27	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
28	nsv894149	chr9:136874158-136950691	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
29	nsv894150	chr9:136887757-136944827	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
30	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
31	esv3396736	chr9:136889911-136890506	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136885800-136890000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:136889400-136890000	Enhancers	Fetal Muscle Trunk	muscle
3	chr9:136889400-136890800	Enhancers	Placenta	Placenta
4	chr9:136889400-136891200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:136889400-136891200	Active TSS	Brain Cingulate Gyrus	brain
6	chr9:136889400-136891400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:136889600-136890000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:136889600-136890000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:136889600-136890000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr9:136889600-136890000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:136889600-136890000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr9:136889600-136890000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:136889600-136890000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr9:136889600-136890000	Enhancers	Colon Smooth Muscle	Colon
15	chr9:136889600-136890000	Flanking Active TSS	Fetal Brain Female	brain
16	chr9:136889600-136890000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:136889600-136890200	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr9:136889600-136890200	Weak transcription	Spleen	Spleen
19	chr9:136889600-136890400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:136889600-136890400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:136889600-136890600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:136889600-136890800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:136889600-136890800	Active TSS	Brain Hippocampus Middle	brain
24	chr9:136889600-136890800	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr9:136889600-136891200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:136889600-136891200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:136889600-136891200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:136889600-136891200	Active TSS	Brain Anterior Caudate	brain
29	chr9:136889600-136891200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:136889600-136891200	Active TSS	Fetal Lung	lung
31	chr9:136889600-136891200	Active TSS	Rectal Smooth Muscle	rectum
32	chr9:136889600-136891200	Active TSS	GM12878-XiMat	blood
33	chr9:136889600-136891200	Active TSS	NHEK	skin
34	chr9:136889600-136891400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:136889600-136891400	Active TSS	NHDF-Ad	bronchial
36	chr9:136889600-136891600	Active TSS	A549	lung
37	chr9:136889600-136891800	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr9:136889600-136891800	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr9:136889800-136890000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr9:136889800-136890000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:136889800-136890000	Enhancers	Primary B cells from peripheral blood	blood
42	chr9:136889800-136890000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr9:136889800-136890000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:136889800-136890000	Weak transcription	Fetal Intestine Large	intestine
45	chr9:136889800-136890000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr9:136889800-136890000	Flanking Active TSS	Osteobl	bone
47	chr9:136889800-136890200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:136889800-136890200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr9:136889800-136890200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr9:136889800-136890200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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