Variant report

Variant	rs10953871
Chromosome Location	chr7:118270829-118270830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:118266967..118268957-chr7:118270334..118272916,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10235550	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1120921	0.85[EUR][1000 genomes]
rs1120922	0.85[EUR][1000 genomes]
rs11509197	0.87[EUR][1000 genomes]
rs11560382	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11761992	0.82[EUR][1000 genomes]
rs11762065	0.83[EUR][1000 genomes]
rs11765778	0.81[EUR][1000 genomes]
rs11767676	0.82[EUR][1000 genomes]
rs11771057	0.87[EUR][1000 genomes]
rs12706196	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13225141	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13241168	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1355314	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1397325	0.85[EUR][1000 genomes]
rs1510502	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1510504	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1606005	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1721228	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1880152	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916710	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1916713	0.81[EUR][1000 genomes]
rs1916716	0.84[EUR][1000 genomes]
rs1996945	0.82[EUR][1000 genomes]
rs2030649	0.87[EUR][1000 genomes]
rs2049368	0.87[EUR][1000 genomes]
rs2063370	0.87[EUR][1000 genomes]
rs2175297	0.87[EUR][1000 genomes]
rs2175298	0.88[EUR][1000 genomes]
rs2175299	0.87[EUR][1000 genomes]
rs2214150	0.85[EUR][1000 genomes]
rs2248782	0.85[EUR][1000 genomes]
rs2402399	0.80[EUR][1000 genomes]
rs2521214	0.85[EUR][1000 genomes]
rs2521215	0.85[EUR][1000 genomes]
rs2521216	0.85[EUR][1000 genomes]
rs2521217	0.85[EUR][1000 genomes]
rs2665760	0.85[EUR][1000 genomes]
rs2665763	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2665764	0.85[EUR][1000 genomes]
rs2665765	0.85[EUR][1000 genomes]
rs2665766	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2665769	0.85[EUR][1000 genomes]
rs2665770	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2689753	0.85[EUR][1000 genomes]
rs2689754	0.85[EUR][1000 genomes]
rs2689755	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2689756	0.84[EUR][1000 genomes]
rs2689757	0.85[EUR][1000 genomes]
rs2689758	0.85[EUR][1000 genomes]
rs304513	0.84[EUR][1000 genomes]
rs304514	0.84[EUR][1000 genomes]
rs304521	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs304522	0.85[EUR][1000 genomes]
rs304524	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs304525	0.84[EUR][1000 genomes]
rs304534	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs304535	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730879	0.87[EUR][1000 genomes]
rs55698509	0.87[EUR][1000 genomes]
rs56141723	0.87[EUR][1000 genomes]
rs57668449	0.87[EUR][1000 genomes]
rs58071836	0.87[EUR][1000 genomes]
rs58152297	0.87[EUR][1000 genomes]
rs62468656	0.81[EUR][1000 genomes]
rs62470082	0.87[EUR][1000 genomes]
rs62470083	0.87[EUR][1000 genomes]
rs62470084	0.86[EUR][1000 genomes]
rs62470086	0.87[EUR][1000 genomes]
rs62470087	0.88[EUR][1000 genomes]
rs6466668	0.81[EUR][1000 genomes]
rs6466669	0.81[EUR][1000 genomes]
rs6466671	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6949669	0.87[EUR][1000 genomes]
rs6951273	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6967347	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6968493	0.82[EUR][1000 genomes]
rs6972496	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778876	0.87[EUR][1000 genomes]
rs7796854	0.82[EUR][1000 genomes]
rs7797750	0.81[EUR][1000 genomes]
rs7800988	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960884	0.87[EUR][1000 genomes]
rs960886	0.87[EUR][1000 genomes]
rs9641606	0.87[EUR][1000 genomes]
rs9641607	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3370633	chr7:118269216-118274214	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118269600-118272400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:118269600-118272400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:118269800-118271800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:118269800-118272000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:118269800-118272200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:118269800-118272200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:118269800-118272200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:118269800-118272200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:118269800-118272400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:118270400-118271600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:118270400-118271600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:118270400-118280400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:118270600-118272000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:118270800-118271400	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links