Variant report

Variant	rs304524
Chromosome Location	chr7:118228603-118228604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117822617..117825221-chr7:118228070..118230424,2	K562	blood:

Variant related genes	Relation type
ENSG00000128534	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10235550	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10953871	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1120921	0.93[EUR][1000 genomes]
rs1120922	0.93[EUR][1000 genomes]
rs11560382	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11765778	0.92[EUR][1000 genomes]
rs11772018	0.86[EUR][1000 genomes]
rs12668697	0.86[EUR][1000 genomes]
rs12706196	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13225141	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13237572	0.82[EUR][1000 genomes]
rs13241168	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1355314	0.81[AMR][1000 genomes]
rs1397325	0.93[EUR][1000 genomes]
rs1510502	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1510504	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1588447	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1606005	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1721228	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1880152	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1916710	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1916713	0.90[EUR][1000 genomes]
rs1916716	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2214150	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2248782	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2402397	0.86[EUR][1000 genomes]
rs2402398	0.85[EUR][1000 genomes]
rs2402399	0.89[EUR][1000 genomes]
rs2521214	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2521215	0.93[EUR][1000 genomes]
rs2521216	0.93[EUR][1000 genomes]
rs2521217	0.93[EUR][1000 genomes]
rs2665760	0.93[EUR][1000 genomes]
rs2665763	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2665764	0.93[EUR][1000 genomes]
rs2665765	0.93[EUR][1000 genomes]
rs2665766	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2665769	0.93[EUR][1000 genomes]
rs2665770	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2665773	0.86[EUR][1000 genomes]
rs2689753	0.93[EUR][1000 genomes]
rs2689754	0.93[EUR][1000 genomes]
rs2689755	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2689756	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2689757	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2689758	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs304513	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs304514	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs304521	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs304522	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs304525	0.89[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs304526	0.83[ASN][1000 genomes]
rs304534	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs304535	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4582494	0.86[EUR][1000 genomes]
rs62468656	0.92[EUR][1000 genomes]
rs62468657	0.85[EUR][1000 genomes]
rs62468658	0.85[EUR][1000 genomes]
rs6466668	0.92[EUR][1000 genomes]
rs6466669	0.92[EUR][1000 genomes]
rs6466671	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6951273	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6967347	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6968493	0.91[EUR][1000 genomes]
rs6972496	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7797235	0.86[EUR][1000 genomes]
rs7797750	0.92[EUR][1000 genomes]
rs7800988	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7806733	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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