Variant report

Variant	rs13237572
Chromosome Location	chr7:118263380-118263381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11560382	0.83[EUR][1000 genomes]
rs11765778	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11767676	0.82[CEU][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap]
rs11772018	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12668697	0.82[EUR][1000 genomes]
rs13241168	0.81[EUR][1000 genomes]
rs1510502	0.84[EUR][1000 genomes]
rs1588447	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs1721228	0.83[EUR][1000 genomes]
rs1916710	0.82[EUR][1000 genomes]
rs1916713	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1996945	0.82[CEU][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];0.80[TSI][hapmap]
rs2402397	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2402398	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2402399	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2665763	0.83[EUR][1000 genomes]
rs2665766	0.83[EUR][1000 genomes]
rs2665770	0.83[EUR][1000 genomes]
rs2689755	0.83[EUR][1000 genomes]
rs304524	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs304525	0.85[CEU][hapmap];0.80[TSI][hapmap]
rs304534	0.81[EUR][1000 genomes]
rs304535	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4582494	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468656	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468657	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62468658	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6466668	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6466669	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6466671	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6951273	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6967347	0.84[EUR][1000 genomes]
rs6968493	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6972496	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7797235	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7797750	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7806733	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2263363	chr7:118263279-118263686	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13237572	ING3	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118262400-118263800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:118262800-118264000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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