Variant report

Variant	rs10954754
Chromosome Location	chr7:84131879-84131880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1029539	0.87[EUR][1000 genomes]
rs12669232	0.87[AMR][1000 genomes]
rs12671342	0.82[AMR][1000 genomes]
rs12673557	0.87[AMR][1000 genomes]
rs12707648	0.82[AMR][1000 genomes]
rs12707654	0.92[EUR][1000 genomes]
rs13223611	0.87[AMR][1000 genomes]
rs13227076	0.82[CEU][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs13230824	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13231225	0.87[AMR][1000 genomes]
rs13235879	1.00[ASW][hapmap];0.82[CEU][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs13240778	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13243946	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17159069	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17159126	0.83[JPT][hapmap]
rs1922339	0.92[EUR][1000 genomes]
rs1922342	0.92[EUR][1000 genomes]
rs1922343	0.86[EUR][1000 genomes]
rs2023989	0.92[EUR][1000 genomes]
rs2158170	0.87[AMR][1000 genomes]
rs2527543	0.86[EUR][1000 genomes]
rs2706896	0.86[EUR][1000 genomes]
rs2706926	0.87[EUR][1000 genomes]
rs2706927	0.92[EUR][1000 genomes]
rs2706928	0.92[EUR][1000 genomes]
rs2715033	0.86[EUR][1000 genomes]
rs2715034	0.83[EUR][1000 genomes]
rs34066589	0.87[AMR][1000 genomes]
rs34465986	0.86[AMR][1000 genomes]
rs34483851	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34581735	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34814672	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34822336	0.87[AMR][1000 genomes]
rs35428742	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35651748	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35781663	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35949214	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3815067	0.83[JPT][hapmap]
rs55737059	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55920699	0.87[AMR][1000 genomes]
rs62471988	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62472049	0.84[ASN][1000 genomes]
rs6947640	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6948391	0.87[AMR][1000 genomes]
rs6948764	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6960804	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6961917	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs71558727	0.82[AMR][1000 genomes]
rs7795496	0.92[EUR][1000 genomes]
rs7804930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7810450	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv888634	chr7:84086502-84196258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv888636	chr7:84117594-84334498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84131400-84132000	Enhancers	Adipose Nuclei	Adipose
2	chr7:84131400-84132200	Enhancers	Colon Smooth Muscle	Colon
3	chr7:84131800-84132200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:84131800-84132200	Enhancers	Brain Germinal Matrix	brain
5	chr7:84131800-84132200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr7:84131800-84136400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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