Variant report

Variant	rs13230824
Chromosome Location	chr7:84099761-84099762
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10954754	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12669232	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12673557	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13223611	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13227076	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs13231225	0.80[AMR][1000 genomes]
rs13235879	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap]
rs13240778	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13243946	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17159069	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159126	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs1922343	0.84[EUR][1000 genomes]
rs2158170	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2527541	0.83[EUR][1000 genomes]
rs2527543	0.84[EUR][1000 genomes]
rs2706896	0.84[EUR][1000 genomes]
rs2706901	0.83[EUR][1000 genomes]
rs2715034	0.86[EUR][1000 genomes]
rs2715035	0.81[EUR][1000 genomes]
rs2715036	0.84[EUR][1000 genomes]
rs2715038	0.83[EUR][1000 genomes]
rs2715040	0.83[EUR][1000 genomes]
rs34066589	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34465986	0.81[ASN][1000 genomes]
rs34483851	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34581735	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34814672	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34822336	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35428742	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35651748	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35781663	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35949214	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3815067	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs55737059	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55920699	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62471988	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6947640	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6948391	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6948764	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6960804	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6961917	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7804930	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7810450	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1023848	chr7:83985028-84101774	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761342	chr7:83985028-84101798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1034270	chr7:84068277-84101774	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv888634	chr7:84086502-84196258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84094400-84101600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:84095600-84100000	Weak transcription	Adipose Nuclei	Adipose
3	chr7:84098800-84107000	Weak transcription	NHDF-Ad	bronchial

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