Variant report

Variant	rs2527541
Chromosome Location	chr7:84096885-84096886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1014498	0.90[ASN][1000 genomes]
rs1029538	0.96[ASN][1000 genomes]
rs1029539	0.82[EUR][1000 genomes]
rs1228897	0.95[ASN][1000 genomes]
rs1228899	0.95[ASN][1000 genomes]
rs1228902	0.86[ASN][1000 genomes]
rs1228903	0.83[ASN][1000 genomes]
rs1228904	0.90[ASN][1000 genomes]
rs1228905	0.87[ASN][1000 genomes]
rs1228906	0.83[ASN][1000 genomes]
rs1228907	0.99[ASN][1000 genomes]
rs1228911	0.96[ASN][1000 genomes]
rs1228918	0.94[ASN][1000 genomes]
rs1228921	0.96[ASN][1000 genomes]
rs1228924	0.96[ASN][1000 genomes]
rs1228925	0.96[ASN][1000 genomes]
rs1228928	0.95[ASN][1000 genomes]
rs1228941	0.94[ASN][1000 genomes]
rs1228968	0.93[ASN][1000 genomes]
rs1228969	0.99[ASN][1000 genomes]
rs1228972	0.98[ASN][1000 genomes]
rs1228973	0.98[ASN][1000 genomes]
rs1228975	0.85[ASN][1000 genomes]
rs1228977	0.94[ASN][1000 genomes]
rs1228978	0.93[ASN][1000 genomes]
rs1235296	0.96[ASN][1000 genomes]
rs12707654	0.87[EUR][1000 genomes]
rs13230824	0.83[EUR][1000 genomes]
rs17159069	0.85[EUR][1000 genomes]
rs1922339	0.87[EUR][1000 genomes]
rs1922342	0.87[EUR][1000 genomes]
rs1922343	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2023989	0.87[EUR][1000 genomes]
rs2527524	0.93[ASN][1000 genomes]
rs2527543	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2706896	0.92[EUR][1000 genomes]
rs2706901	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706926	0.82[EUR][1000 genomes]
rs2706927	0.87[EUR][1000 genomes]
rs2706928	0.87[EUR][1000 genomes]
rs2715033	0.81[EUR][1000 genomes]
rs2715034	0.90[EUR][1000 genomes]
rs2715035	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2715036	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2715038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2715040	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2715041	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35781663	0.83[EUR][1000 genomes]
rs7795496	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1023848	chr7:83985028-84101774	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761342	chr7:83985028-84101798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1034270	chr7:84068277-84101774	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv888634	chr7:84086502-84196258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	esv1796198	chr7:84086924-84097423	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84094400-84101600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:84095600-84100000	Weak transcription	Adipose Nuclei	Adipose
3	chr7:84096000-84097600	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:84096400-84098400	Weak transcription	NHDF-Ad	bronchial

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