Variant report

Variant	rs10955256
Chromosome Location	chr8:102552089-102552090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102551350..102553008-chr8:102581604..102583551,2	MCF-7	breast:
2	chr8:102532737..102535677-chr8:102549512..102552169,3	MCF-7	breast:
3	chr8:102544008..102547197-chr8:102550488..102554621,4	MCF-7	breast:
4	chr8:102550263..102552940-chr8:102564764..102566372,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10505010	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs10955257	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11776316	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11776725	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11783704	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12114930	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13256544	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13263539	0.81[CEU][hapmap];0.92[GIH][hapmap];0.81[AMR][1000 genomes]
rs13265291	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17397776	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17397811	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17476242	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1880634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1880635	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1981361	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2127034	0.81[CEU][hapmap]
rs2127035	0.81[CEU][hapmap];0.92[GIH][hapmap]
rs34216075	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60028447	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6984360	1.00[CEU][hapmap];0.83[MEX][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs922466	0.89[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10955256	DCAF13	cis	parietal	SCAN
rs10955256	FBXO43	cis	cerebellum	SCAN

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102527200-102555400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:102527200-102556800	Weak transcription	Fetal Intestine Large	intestine
3	chr8:102550000-102552200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:102550000-102552800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:102550000-102552800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:102550000-102553000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr8:102550200-102552800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:102550200-102553000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:102550200-102553200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:102550200-102553200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:102550200-102553400	Enhancers	NHEK	skin
12	chr8:102550200-102554000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:102550400-102552200	Enhancers	Rectal Smooth Muscle	rectum
14	chr8:102550400-102553200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:102550600-102555400	Weak transcription	Gastric	stomach
16	chr8:102550600-102557000	Weak transcription	Small Intestine	intestine
17	chr8:102550800-102553000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:102550800-102558800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:102551000-102552800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:102551000-102553400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:102551200-102552200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:102551200-102552200	Enhancers	Esophagus	oesophagus
23	chr8:102551200-102552200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr8:102551200-102556200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr8:102551400-102552200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:102551400-102552200	Enhancers	Lung	lung
27	chr8:102551400-102553000	Enhancers	NHDF-Ad	bronchial
28	chr8:102551400-102555400	Weak transcription	Stomach Mucosa	stomach
29	chr8:102551400-102577400	Weak transcription	Fetal Stomach	stomach
30	chr8:102551600-102552600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:102551600-102552600	Weak transcription	Osteobl	bone
32	chr8:102551600-102556800	Weak transcription	A549	lung
33	chr8:102551600-102557000	Weak transcription	HUVEC	blood vessel
34	chr8:102551800-102552200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:102551800-102552200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr8:102551800-102552400	Weak transcription	NH-A	brain
37	chr8:102551800-102552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:102551800-102553600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:102551800-102555400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:102551800-102555400	Weak transcription	Placenta	Placenta
41	chr8:102551800-102555400	Weak transcription	Pancreas	Pancrea
42	chr8:102552000-102552200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:102552000-102552200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr8:102552000-102552200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr8:102552000-102552400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr8:102552000-102552400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:102552000-102552400	Weak transcription	HMEC	breast
48	chr8:102552000-102552400	Weak transcription	HSMM	muscle
49	chr8:102552000-102552400	Weak transcription	HSMMtube	muscle

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