Variant report

Variant	rs10955257
Chromosome Location	chr8:102552499-102552500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102540601..102548196-chr8:102552198..102557907,8	MCF-7	breast:
2	chr8:102551350..102553008-chr8:102581604..102583551,2	MCF-7	breast:
3	chr8:102552353..102555344-chr8:102561709..102563737,2	MCF-7	breast:
4	chr8:102460593..102461440-chr8:102552312..102553000,3	MCF-7	breast:
5	chr8:102544008..102547197-chr8:102550488..102554621,4	MCF-7	breast:
6	chr8:102550263..102552940-chr8:102564764..102566372,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253991	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10955256	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11776316	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11776725	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11783704	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12114930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13256544	0.95[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13265291	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397776	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17397811	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17476242	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1880634	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1880635	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1981361	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34216075	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60028447	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984360	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs922466	0.94[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102527200-102555400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:102527200-102556800	Weak transcription	Fetal Intestine Large	intestine
3	chr8:102550000-102552800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:102550000-102552800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:102550000-102553000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:102550200-102552800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:102550200-102553000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:102550200-102553200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:102550200-102553200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:102550200-102553400	Enhancers	NHEK	skin
11	chr8:102550200-102554000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr8:102550400-102553200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:102550600-102555400	Weak transcription	Gastric	stomach
14	chr8:102550600-102557000	Weak transcription	Small Intestine	intestine
15	chr8:102550800-102553000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:102550800-102558800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:102551000-102552800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:102551000-102553400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:102551200-102556200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:102551400-102553000	Enhancers	NHDF-Ad	bronchial
21	chr8:102551400-102555400	Weak transcription	Stomach Mucosa	stomach
22	chr8:102551400-102577400	Weak transcription	Fetal Stomach	stomach
23	chr8:102551600-102552600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:102551600-102552600	Weak transcription	Osteobl	bone
25	chr8:102551600-102556800	Weak transcription	A549	lung
26	chr8:102551600-102557000	Weak transcription	HUVEC	blood vessel
27	chr8:102551800-102552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:102551800-102553600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:102551800-102555400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:102551800-102555400	Weak transcription	Placenta	Placenta
31	chr8:102551800-102555400	Weak transcription	Pancreas	Pancrea
32	chr8:102552200-102552800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr8:102552200-102553200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr8:102552200-102555000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:102552200-102555400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:102552200-102555600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr8:102552200-102557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:102552200-102558600	Weak transcription	Lung	lung
39	chr8:102552200-102564200	Weak transcription	Esophagus	oesophagus
40	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:102552400-102552600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr8:102552400-102552600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:102552400-102552600	Enhancers	NH-A	brain
44	chr8:102552400-102552800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr8:102552400-102552800	Enhancers	HSMM	muscle
46	chr8:102552400-102553000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr8:102552400-102553000	Enhancers	HMEC	breast
48	chr8:102552400-102553000	Enhancers	HSMMtube	muscle

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