Variant report

Variant	rs10955542
Chromosome Location	chr8:89273678-89273679
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89254721..89256810-chr8:89272471..89275447,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10504846	0.80[ASN][1000 genomes]
rs10955556	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11986810	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12114224	0.80[ASN][1000 genomes]
rs16880720	0.80[ASN][1000 genomes]
rs16880925	0.80[ASN][1000 genomes]
rs16880935	0.80[ASN][1000 genomes]
rs17667732	0.80[ASN][1000 genomes]
rs17667749	0.80[ASN][1000 genomes]
rs17667853	0.80[ASN][1000 genomes]
rs17667883	0.80[ASN][1000 genomes]
rs17729077	0.85[ASN][1000 genomes]
rs17729255	0.85[ASN][1000 genomes]
rs17729512	0.80[ASN][1000 genomes]
rs1915017	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1915018	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1915019	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28904573	0.85[ASN][1000 genomes]
rs28904574	0.85[ASN][1000 genomes]
rs28986490	0.80[ASN][1000 genomes]
rs28986498	0.80[ASN][1000 genomes]
rs34725691	0.85[EUR][1000 genomes]
rs36013966	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3844198	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4043663	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55888684	0.80[ASN][1000 genomes]
rs56053776	0.80[ASN][1000 genomes]
rs56165694	0.80[ASN][1000 genomes]
rs56322839	0.80[ASN][1000 genomes]
rs57279787	0.80[ASN][1000 genomes]
rs57749754	0.80[ASN][1000 genomes]
rs58695872	0.80[ASN][1000 genomes]
rs58755914	0.80[ASN][1000 genomes]
rs59122715	0.85[ASN][1000 genomes]
rs59544142	0.80[ASN][1000 genomes]
rs61160643	0.88[ASN][1000 genomes]
rs6994019	0.83[EUR][1000 genomes]
rs7000030	0.80[ASN][1000 genomes]
rs7003179	0.80[ASN][1000 genomes]
rs7010876	0.81[EUR][1000 genomes]
rs7013819	0.88[ASN][1000 genomes]
rs73692211	0.85[ASN][1000 genomes]
rs73692213	0.85[ASN][1000 genomes]
rs73692214	0.80[ASN][1000 genomes]
rs73692215	0.80[ASN][1000 genomes]
rs73692216	0.80[ASN][1000 genomes]
rs73692217	0.80[ASN][1000 genomes]
rs73692222	0.80[ASN][1000 genomes]
rs73692223	0.80[ASN][1000 genomes]
rs73692224	0.80[ASN][1000 genomes]
rs73692225	0.80[ASN][1000 genomes]
rs73692226	0.80[ASN][1000 genomes]
rs7816934	0.85[ASN][1000 genomes]
rs7817311	0.80[ASN][1000 genomes]
rs7833834	0.85[ASN][1000 genomes]
rs7837860	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs7843531	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89257400-89275400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:89269000-89275600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:89270600-89274400	Weak transcription	Fetal Intestine Large	intestine
4	chr8:89270800-89275600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:89271000-89274200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:89271400-89274200	Weak transcription	Aorta	Aorta
7	chr8:89271600-89274400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:89271800-89274200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:89271800-89281400	Weak transcription	Osteobl	bone
10	chr8:89272800-89274800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr8:89273400-89274400	Enhancers	Fetal Lung	lung
12	chr8:89273400-89274600	Enhancers	Fetal Heart	heart
13	chr8:89273600-89274000	Enhancers	Fetal Brain Male	brain

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