Variant report

Variant	rs36013966
Chromosome Location	chr8:89302448-89302449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:89302385..89303116-chr8:89566700..89567661,2	MCF-7	breast:
2	chr8:88844020..88845021-chr8:89301693..89302582,7	MCF-7	breast:
3	chr8:88843989..88844789-chr8:89301629..89302601,7	MCF-7	breast:
4	chr8:89216378..89217285-chr8:89301979..89302555,2	MCF-7	breast:
5	chr8:89085092..89086115-chr8:89301985..89302665,3	MCF-7	breast:
6	chr8:89301825..89302992-chr8:89566410..89567020,3	MCF-7	breast:
7	chr8:88593845..88594891-chr8:89301648..89302675,6	MCF-7	breast:
8	chr8:88707161..88708115-chr8:89301700..89302605,4	MCF-7	breast:
9	chr8:88949151..88949863-chr8:89301696..89302485,3	MCF-7	breast:
10	chr8:89215240..89216267-chr8:89301694..89302670,5	MCF-7	breast:
11	chr8:88572140..88572915-chr8:89301717..89302683,2	MCF-7	breast:
12	chr8:89299264..89301272-chr8:89301933..89304067,2	K562	blood:

No data

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10504846	0.85[ASN][1000 genomes]
rs10955542	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10955556	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11986810	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12114224	0.85[ASN][1000 genomes]
rs16880720	0.85[ASN][1000 genomes]
rs16880925	0.85[ASN][1000 genomes]
rs16880935	0.85[ASN][1000 genomes]
rs17667732	0.85[ASN][1000 genomes]
rs17667749	0.85[ASN][1000 genomes]
rs17667853	0.85[ASN][1000 genomes]
rs17667883	0.85[ASN][1000 genomes]
rs17729077	0.80[ASN][1000 genomes]
rs17729255	0.80[ASN][1000 genomes]
rs17729512	0.85[ASN][1000 genomes]
rs17729596	0.83[ASN][1000 genomes]
rs1915017	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1915018	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1915019	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28904573	0.80[ASN][1000 genomes]
rs28904574	0.80[ASN][1000 genomes]
rs28986476	0.83[ASN][1000 genomes]
rs28986490	0.85[ASN][1000 genomes]
rs28986498	0.85[ASN][1000 genomes]
rs3844198	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55888684	0.85[ASN][1000 genomes]
rs56053776	0.85[ASN][1000 genomes]
rs56165694	0.85[ASN][1000 genomes]
rs56322839	0.85[ASN][1000 genomes]
rs57279787	0.85[ASN][1000 genomes]
rs57749754	0.85[ASN][1000 genomes]
rs58695872	0.85[ASN][1000 genomes]
rs58755914	0.85[ASN][1000 genomes]
rs59122715	0.80[ASN][1000 genomes]
rs59544142	0.85[ASN][1000 genomes]
rs7000030	0.85[ASN][1000 genomes]
rs7003179	0.85[ASN][1000 genomes]
rs73692211	0.80[ASN][1000 genomes]
rs73692213	0.80[ASN][1000 genomes]
rs73692214	0.85[ASN][1000 genomes]
rs73692215	0.85[ASN][1000 genomes]
rs73692216	0.85[ASN][1000 genomes]
rs73692217	0.85[ASN][1000 genomes]
rs73692218	0.83[ASN][1000 genomes]
rs73692219	0.83[ASN][1000 genomes]
rs73692222	0.85[ASN][1000 genomes]
rs73692223	0.85[ASN][1000 genomes]
rs73692224	0.85[ASN][1000 genomes]
rs73692225	0.85[ASN][1000 genomes]
rs73692226	0.85[ASN][1000 genomes]
rs73692227	0.83[ASN][1000 genomes]
rs7816934	0.89[ASN][1000 genomes]
rs7817311	0.85[ASN][1000 genomes]
rs7833834	0.80[ASN][1000 genomes]
rs7837860	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7843531	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89293800-89309800	Weak transcription	Aorta	Aorta
2	chr8:89294200-89309400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:89294200-89309400	Weak transcription	NHDF-Ad	bronchial
4	chr8:89299800-89304200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:89300400-89310600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:89301600-89310200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:89301800-89303400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:89301800-89304800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:89301800-89313000	Weak transcription	Fetal Brain Female	brain
10	chr8:89301800-89315000	Weak transcription	Fetal Stomach	stomach
11	chr8:89302000-89303400	Weak transcription	Osteobl	bone
12	chr8:89302000-89311200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:89302000-89326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:89302400-89307200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:89302400-89309600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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