Variant report

Variant	rs10955622
Chromosome Location	chr8:113422943-113422944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10086302	0.86[AMR][1000 genomes]
rs10089402	0.86[AMR][1000 genomes]
rs10090328	0.86[AMR][1000 genomes]
rs10094970	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10097860	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10098195	0.86[AMR][1000 genomes]
rs10099418	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10107721	0.86[AMR][1000 genomes]
rs10112911	0.86[AMR][1000 genomes]
rs1026285	0.86[AMR][1000 genomes]
rs1026286	0.86[AMR][1000 genomes]
rs1026287	0.86[AMR][1000 genomes]
rs10755908	0.86[AMR][1000 genomes]
rs11778069	0.86[AMR][1000 genomes]
rs12114792	0.86[AMR][1000 genomes]
rs12115016	0.86[AMR][1000 genomes]
rs12115151	0.86[AMR][1000 genomes]
rs1388960	0.86[AMR][1000 genomes]
rs1388961	0.86[AMR][1000 genomes]
rs1492660	0.86[AMR][1000 genomes]
rs1492661	0.86[AMR][1000 genomes]
rs1492662	0.86[AMR][1000 genomes]
rs1492665	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1492666	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1963038	0.86[AMR][1000 genomes]
rs2012465	0.86[AMR][1000 genomes]
rs2123492	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2167776	0.86[AMR][1000 genomes]
rs2883427	0.86[AMR][1000 genomes]
rs4338134	0.86[AMR][1000 genomes]
rs56097546	0.86[AMR][1000 genomes]
rs62516474	0.86[AMR][1000 genomes]
rs6469416	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6469420	0.86[AMR][1000 genomes]
rs6999358	0.85[AMR][1000 genomes]
rs7823743	0.86[AMR][1000 genomes]
rs7824048	0.86[AMR][1000 genomes]
rs7824210	0.86[AMR][1000 genomes]
rs7824211	0.86[AMR][1000 genomes]
rs7832256	0.86[AMR][1000 genomes]
rs7832422	0.85[AMR][1000 genomes]
rs7843346	0.86[AMR][1000 genomes]
rs7844160	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1794114	chr8:113421902-113423734	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3330332	chr8:113422026-113424074	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113411000-113426400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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