Variant report

Variant	rs10955856
Chromosome Location	chr8:119133116-119133117
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:119122766..119127102-chr8:119131319..119136472,9	MCF-7	breast:
2	chr8:118874293..118875149-chr8:119132498..119133544,7	MCF-7	breast:
3	chr8:118896207..118897097-chr8:119132804..119133487,2	MCF-7	breast:
4	chr8:119132540..119133242-chr8:119361404..119362055,2	MCF-7	breast:
5	chr8:118875539..118876407-chr8:119132500..119133350,4	MCF-7	breast:
6	chr8:118875550..118876436-chr8:119132581..119133620,6	MCF-7	breast:
7	chr8:119132642..119133483-chr8:119426942..119427821,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182197	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10755915	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808494	0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955855	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11781739	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12548404	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12675013	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12679263	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs13270513	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1811528	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3757991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4147528	1.00[YRI][hapmap]
rs4876400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4876791	0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6469721	0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469722	0.84[ASN][1000 genomes]
rs6991511	0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6993268	0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7008536	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7010382	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7011384	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7014053	0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7818011	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7835605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7835956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7837824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs897828	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs897830	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv891412	chr8:119107051-119139385	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119124800-119136200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:119125000-119134200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:119125400-119138200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:119125800-119134800	Weak transcription	Esophagus	oesophagus
5	chr8:119125800-119149600	Weak transcription	Aorta	Aorta
6	chr8:119126200-119137400	Weak transcription	Lung	lung
7	chr8:119128600-119134000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:119128800-119134200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:119128800-119134600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:119129000-119134400	Weak transcription	HepG2	liver
11	chr8:119129000-119134600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:119129200-119134200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:119129200-119134600	Weak transcription	Thymus	Thymus
14	chr8:119129600-119134600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:119130600-119134600	Weak transcription	Fetal Thymus	thymus
16	chr8:119130800-119133200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:119131200-119133400	Enhancers	NHLF	lung
18	chr8:119131200-119134400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:119131400-119133200	Enhancers	NHDF-Ad	bronchial
20	chr8:119131400-119133600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:119131600-119133400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:119131600-119133400	Enhancers	Osteobl	bone
23	chr8:119131600-119133600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:119131600-119134600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr8:119131600-119135000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:119131800-119133200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:119131800-119133400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:119131800-119133400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:119132000-119133200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr8:119132000-119133200	Enhancers	A549	lung
31	chr8:119132000-119133200	Enhancers	NH-A	brain
32	chr8:119132000-119135400	Enhancers	NHEK	skin
33	chr8:119132000-119136600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr8:119132200-119133200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr8:119132400-119133200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr8:119132600-119133200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:119132600-119133800	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr8:119132600-119134200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:119132800-119133600	Enhancers	HMEC	breast
40	chr8:119132800-119134000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:119132800-119134200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr8:119132800-119139000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:119133000-119133200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr8:119133000-119133200	Enhancers	Stomach Mucosa	stomach
45	chr8:119133000-119133400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:119133000-119133400	Enhancers	HUVEC	blood vessel
47	chr8:119133000-119133400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr8:119133000-119133600	Enhancers	Hela-S3	cervix
49	chr8:119133000-119134200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr8:119133000-119134200	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links