Variant report

Variant	rs12548404
Chromosome Location	chr8:119131774-119131775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119122766..119127102-chr8:119131319..119136472,9	MCF-7	breast:
2	chr8:119122005..119126332-chr8:119128883..119132191,5	K562	blood:

Variant related genes	Relation type
ENSG00000182197	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10755915	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808492	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10808494	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10955855	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10955856	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12675013	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1811528	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3757991	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4876400	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4876791	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6469721	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469722	0.87[ASN][1000 genomes]
rs6991511	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6993268	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7008536	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7010382	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7011384	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7014053	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7818011	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7835605	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7835956	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837824	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs897828	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs897830	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv891412	chr8:119107051-119139385	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119124800-119136200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:119125000-119134200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:119125400-119138200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:119125800-119132000	Weak transcription	NH-A	brain
5	chr8:119125800-119132200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:119125800-119132600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:119125800-119134800	Weak transcription	Esophagus	oesophagus
8	chr8:119125800-119149600	Weak transcription	Aorta	Aorta
9	chr8:119126200-119131800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:119126200-119137400	Weak transcription	Lung	lung
11	chr8:119126400-119132000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:119126400-119132000	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:119128600-119132200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:119128600-119134000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr8:119128800-119132200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:119128800-119134200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:119128800-119134600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:119129000-119131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr8:119129000-119131800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:119129000-119131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:119129000-119134400	Weak transcription	HepG2	liver
22	chr8:119129000-119134600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:119129200-119132000	Weak transcription	NHEK	skin
24	chr8:119129200-119132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:119129200-119134200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:119129200-119134600	Weak transcription	Thymus	Thymus
27	chr8:119129400-119132200	Weak transcription	HMEC	breast
28	chr8:119129600-119134600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr8:119130600-119134600	Weak transcription	Fetal Thymus	thymus
30	chr8:119130800-119133200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:119131000-119132000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:119131200-119132600	Enhancers	HSMMtube	muscle
33	chr8:119131200-119133400	Enhancers	NHLF	lung
34	chr8:119131200-119134400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:119131400-119133200	Enhancers	NHDF-Ad	bronchial
36	chr8:119131400-119133600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr8:119131600-119133400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:119131600-119133400	Enhancers	Osteobl	bone
39	chr8:119131600-119133600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr8:119131600-119134600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr8:119131600-119135000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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