Variant report

Variant	rs10955964
Chromosome Location	chr8:121254423-121254424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10086059	0.85[ASN][1000 genomes]
rs10089433	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10110806	0.85[ASN][1000 genomes]
rs12549391	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13277399	0.85[ASN][1000 genomes]
rs1563400	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1993392	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4871051	0.88[EUR][1000 genomes]
rs7833313	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs993823	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121215200-121260600	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121217200-121261600	Weak transcription	Fetal Intestine Large	intestine
3	chr8:121222200-121255200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:121240600-121254800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:121241200-121254600	Weak transcription	Aorta	Aorta
6	chr8:121244400-121260000	Weak transcription	Placenta	Placenta
7	chr8:121251800-121254600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:121252000-121254600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:121252800-121255200	Enhancers	Colon Smooth Muscle	Colon
10	chr8:121253000-121255400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:121253200-121254600	Enhancers	HSMMtube	muscle
12	chr8:121253200-121254800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr8:121253200-121255000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr8:121253200-121256600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:121253400-121254800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr8:121253400-121255200	Enhancers	Ovary	ovary
17	chr8:121253400-121255400	Enhancers	Rectal Smooth Muscle	rectum
18	chr8:121253400-121256600	Enhancers	Fetal Lung	lung
19	chr8:121253400-121256800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr8:121253600-121254600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:121253600-121254600	Weak transcription	Psoas Muscle	Psoas
22	chr8:121253600-121254800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:121253600-121257000	Enhancers	Fetal Stomach	stomach
24	chr8:121253800-121254800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:121253800-121255400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr8:121253800-121256400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:121254200-121254600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr8:121254200-121254800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr8:121254200-121255200	Weak transcription	Small Intestine	intestine
30	chr8:121254200-121256000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr8:121254200-121256400	Enhancers	HSMM	muscle
32	chr8:121254200-121256400	Enhancers	NHDF-Ad	bronchial
33	chr8:121254400-121254600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr8:121254400-121254600	Enhancers	NHLF	lung
35	chr8:121254400-121255000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr8:121254400-121256000	Enhancers	Fetal Brain Female	brain
37	chr8:121254400-121257400	Enhancers	Fetal Muscle Leg	muscle

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