Variant report

Variant	rs4871051
Chromosome Location	chr8:121259433-121259434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10955964	0.88[EUR][1000 genomes]
rs12549391	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs993823	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121215200-121260600	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121217200-121261600	Weak transcription	Fetal Intestine Large	intestine
3	chr8:121244400-121260000	Weak transcription	Placenta	Placenta
4	chr8:121254600-121278400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:121254800-121278200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:121255400-121278400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:121255800-121260200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:121256200-121269400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:121256200-121269800	Weak transcription	Adipose Nuclei	Adipose
10	chr8:121256400-121263000	Weak transcription	Left Ventricle	heart
11	chr8:121256400-121266400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:121256600-121262000	Weak transcription	HSMMtube	muscle
13	chr8:121256600-121262400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:121256600-121263200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:121256800-121261600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:121257200-121270200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:121257400-121262000	Weak transcription	Ovary	ovary
18	chr8:121257400-121262400	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:121258000-121274600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:121258600-121260400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:121258600-121260400	Weak transcription	Fetal Stomach	stomach
22	chr8:121258600-121262200	Weak transcription	Aorta	Aorta
23	chr8:121258600-121262800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:121258800-121259800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links