Variant report

Variant	rs10956188
Chromosome Location	chr8:87169597-87169598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87169329..87173645-chr8:87175969..87178832,5	MCF-7	breast:
2	chr8:87169494..87171967-chr8:87353783..87356273,2	MCF-7	breast:
3	chr8:87163948..87165822-chr8:87168496..87170737,2	MCF-7	breast:
4	chr8:87159431..87162272-chr8:87167025..87170194,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction
ENSG00000254231	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10097379	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10112474	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10956207	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956310	0.80[ASN][1000 genomes]
rs11777902	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11787431	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12155804	0.84[ASN][1000 genomes]
rs12155882	0.81[ASN][1000 genomes]
rs12156219	0.81[ASN][1000 genomes]
rs12541053	0.80[ASN][1000 genomes]
rs12541292	0.80[ASN][1000 genomes]
rs12541468	0.80[ASN][1000 genomes]
rs12541480	0.80[ASN][1000 genomes]
rs12541499	0.80[ASN][1000 genomes]
rs12544098	0.80[ASN][1000 genomes]
rs12546120	0.80[ASN][1000 genomes]
rs12548440	0.80[ASN][1000 genomes]
rs13254996	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13259716	0.80[ASN][1000 genomes]
rs13265507	0.84[ASN][1000 genomes]
rs13267165	0.80[ASN][1000 genomes]
rs13267261	0.81[ASN][1000 genomes]
rs13272356	0.80[ASN][1000 genomes]
rs13272593	0.80[ASN][1000 genomes]
rs13276090	0.84[ASN][1000 genomes]
rs13276129	0.84[ASN][1000 genomes]
rs13280528	0.80[ASN][1000 genomes]
rs13282492	0.80[ASN][1000 genomes]
rs2626341	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2626343	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2721248	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs33979484	0.84[ASN][1000 genomes]
rs34522097	0.80[ASN][1000 genomes]
rs34660447	0.80[ASN][1000 genomes]
rs34683419	0.82[ASN][1000 genomes]
rs34744391	0.80[ASN][1000 genomes]
rs35141817	0.80[ASN][1000 genomes]
rs35174822	0.80[ASN][1000 genomes]
rs35715881	0.80[ASN][1000 genomes]
rs35844270	0.80[ASN][1000 genomes]
rs4076880	0.80[ASN][1000 genomes]
rs4076881	0.80[ASN][1000 genomes]
rs4311641	0.85[ASN][1000 genomes]
rs4443642	0.85[ASN][1000 genomes]
rs4480105	0.83[ASN][1000 genomes]
rs4515529	0.80[ASN][1000 genomes]
rs4581031	0.84[ASN][1000 genomes]
rs4596629	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4596630	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58965951	0.80[ASN][1000 genomes]
rs6470428	0.80[ASN][1000 genomes]
rs6470714	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67091588	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67149475	0.80[ASN][1000 genomes]
rs67650717	0.85[ASN][1000 genomes]
rs6999252	0.84[ASN][1000 genomes]
rs7010778	0.86[ASN][1000 genomes]
rs7011242	0.80[ASN][1000 genomes]
rs7017607	0.80[ASN][1000 genomes]
rs72606619	0.83[ASN][1000 genomes]
rs72606620	0.84[ASN][1000 genomes]
rs72606621	0.83[ASN][1000 genomes]
rs72606622	0.83[ASN][1000 genomes]
rs72606623	0.84[ASN][1000 genomes]
rs72606624	0.84[ASN][1000 genomes]
rs72606625	0.84[ASN][1000 genomes]
rs72606626	0.84[ASN][1000 genomes]
rs72606627	0.80[ASN][1000 genomes]
rs72606629	0.80[ASN][1000 genomes]
rs72606630	0.80[ASN][1000 genomes]
rs7350116	0.80[ASN][1000 genomes]
rs7461255	0.83[ASN][1000 genomes]
rs7825985	0.80[ASN][1000 genomes]
rs7846210	0.80[ASN][1000 genomes]
rs9969464	0.85[ASN][1000 genomes]
rs9969498	0.85[ASN][1000 genomes]
rs9969499	0.85[ASN][1000 genomes]
rs9969529	0.83[ASN][1000 genomes]
rs9969581	0.82[ASN][1000 genomes]
rs9969582	0.85[ASN][1000 genomes]
rs9969612	0.82[ASN][1000 genomes]
rs9969617	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761443	chr8:87109368-87170814	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1026646	chr8:87111707-87177368	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv611674	chr8:87156172-87315920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1027648	chr8:87161437-87319476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	esv1815028	chr8:87166396-87205568	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1020485	chr8:87167184-87330873	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1023114	chr8:87167184-87335197	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1033960	chr8:87167790-87334194	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv1016050	chr8:87167790-87335197	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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