Variant report

Variant	rs10956228
Chromosome Location	chr8:125973257-125973258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125549326..125552209-chr8:125972808..125974361,2	MCF-7	breast:
2	chr8:125573683..125575467-chr8:125971520..125974069,2	MCF-7	breast:
3	chr8:125968439..125970169-chr8:125972216..125975033,2	K562	blood:
4	chr8:125827816..125829478-chr8:125972453..125974394,2	K562	blood:
5	chr8:125971999..125973720-chr8:126007158..126010144,2	MCF-7	breast:
6	chr8:125869362..125871368-chr8:125970512..125973468,2	MCF-7	breast:
7	chr8:125971245..125973271-chr8:125977522..125979049,2	MCF-7	breast:
8	chr8:125973073..125977537-chr8:126009293..126012548,4	MCF-7	breast:
9	chr8:125731376..125734284-chr8:125972311..125974487,2	MCF-7	breast:
10	chr8:125550750..125552695-chr8:125971803..125974787,2	MCF-7	breast:
11	chr8:125604932..125605919-chr8:125973156..125974325,7	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000255080	Chromatin interaction
ENSG00000255491	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000104549	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000253513	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10089670	1.00[AMR][1000 genomes]
rs10098756	1.00[AMR][1000 genomes]
rs10105404	1.00[AMR][1000 genomes]
rs10110582	1.00[AMR][1000 genomes]
rs10112396	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11998170	1.00[AMR][1000 genomes]
rs12334394	1.00[AMR][1000 genomes]
rs16900255	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16900296	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2033133	1.00[AMR][1000 genomes]
rs28431278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489728	1.00[AMR][1000 genomes]
rs28507055	1.00[AMR][1000 genomes]
rs28513909	1.00[AMR][1000 genomes]
rs4305918	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348129	1.00[AMR][1000 genomes]
rs73348132	1.00[AMR][1000 genomes]
rs7814490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125969000-125974000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:125969800-125974000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:125969800-125985000	Weak transcription	Right Atrium	heart
4	chr8:125970000-125973600	Weak transcription	K562	blood
5	chr8:125970600-125974600	Enhancers	Liver	Liver
6	chr8:125972800-125976200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:125973000-125974000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:125973000-125975000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:125973200-125975200	Enhancers	Fetal Muscle Leg	muscle
10	chr8:125973200-125975800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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