Variant report

Variant	rs10110582
Chromosome Location	chr8:126143965-126143966
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126141138..126145010-chr8:126152287..126154205,3	MCF-7	breast:
2	chr8:126142344..126144214-chr8:126441549..126444543,2	K562	blood:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10089670	1.00[AMR][1000 genomes]
rs10098756	1.00[AMR][1000 genomes]
rs10105404	1.00[AMR][1000 genomes]
rs10106955	0.84[YRI][hapmap]
rs10107980	0.84[YRI][hapmap]
rs10112396	1.00[AMR][1000 genomes]
rs10956228	1.00[AMR][1000 genomes]
rs11995477	0.84[YRI][hapmap]
rs11998170	1.00[AMR][1000 genomes]
rs12334394	1.00[AMR][1000 genomes]
rs16900255	1.00[AMR][1000 genomes]
rs16900296	1.00[AMR][1000 genomes]
rs2033133	1.00[AMR][1000 genomes]
rs2384877	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28431278	1.00[AMR][1000 genomes]
rs28489728	1.00[AMR][1000 genomes]
rs28507055	1.00[AMR][1000 genomes]
rs28513909	1.00[AMR][1000 genomes]
rs4305918	1.00[AMR][1000 genomes]
rs73348129	1.00[AMR][1000 genomes]
rs73348132	1.00[AMR][1000 genomes]
rs73348190	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7814490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv1022954	chr8:126117811-126180331	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126105200-126156400	Weak transcription	Fetal Brain Male	brain
2	chr8:126117600-126157400	Weak transcription	Fetal Brain Female	brain
3	chr8:126117800-126160400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:126118000-126191800	Weak transcription	Thymus	Thymus
5	chr8:126118400-126153600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:126120600-126156400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:126133800-126146200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:126137600-126158400	Weak transcription	Placenta	Placenta
9	chr8:126137600-126213600	Weak transcription	Fetal Stomach	stomach
10	chr8:126137800-126146800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:126138000-126145200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr8:126138000-126146600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:126138000-126163000	Weak transcription	Fetal Kidney	kidney
14	chr8:126138000-126163600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr8:126138000-126191000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr8:126138000-126197800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr8:126138200-126146000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr8:126138200-126150600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:126138200-126156000	Weak transcription	Aorta	Aorta
20	chr8:126138200-126156400	Weak transcription	Esophagus	oesophagus
21	chr8:126138200-126158000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:126138200-126160200	Weak transcription	Spleen	Spleen
23	chr8:126138200-126170400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:126138200-126200400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:126138400-126147400	Weak transcription	Fetal Intestine Large	intestine
26	chr8:126138400-126200200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr8:126139000-126144400	Weak transcription	Fetal Intestine Small	intestine
28	chr8:126139800-126144600	Strong transcription	Primary T cells from cord blood	blood
29	chr8:126140400-126162200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr8:126141000-126151000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:126141000-126153600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:126141000-126155800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr8:126141000-126156200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr8:126141200-126151000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr8:126141200-126151200	Weak transcription	Brain Angular Gyrus	brain
36	chr8:126141200-126153600	Weak transcription	HMEC	breast
37	chr8:126141600-126156400	Weak transcription	Lung	lung
38	chr8:126141600-126156400	Weak transcription	Small Intestine	intestine
39	chr8:126141600-126159800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr8:126141800-126144600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:126141800-126151000	Weak transcription	Brain Hippocampus Middle	brain
42	chr8:126142000-126146200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr8:126142200-126144200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:126142200-126144200	Strong transcription	Fetal Thymus	thymus
45	chr8:126142200-126144400	Strong transcription	Primary B cells from cord blood	blood
46	chr8:126142200-126145000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr8:126142400-126144200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:126142400-126145000	Strong transcription	Dnd41	blood
49	chr8:126142600-126144200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr8:126142600-126144200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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