Variant report

Variant	rs10107980
Chromosome Location	chr8:126222645-126222646
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126216916..126218455-chr8:126221973..126223868,2	K562	blood:
2	chr8:126222075..126223796-chr8:126224521..126227219,2	K562	blood:
3	chr8:126222391..126224423-chr8:126237932..126240192,2	MCF-7	breast:
4	chr8:126214703..126218445-chr8:126219117..126223784,5	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10094940	1.00[MEX][hapmap]
rs10097806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099782	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs10100523	1.00[MEX][hapmap]
rs10105404	0.86[AFR][1000 genomes]
rs10105823	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106955	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110582	0.84[YRI][hapmap]
rs10481154	0.87[ASW][hapmap]
rs11995477	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16900255	1.00[MEX][hapmap];0.93[MKK][hapmap]
rs16900296	1.00[MEX][hapmap];0.93[MKK][hapmap]
rs2384877	0.83[YRI][hapmap]
rs60474927	1.00[AMR][1000 genomes]
rs73349892	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297715	1.00[MEX][hapmap]
rs9940	0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv1034798	chr8:126179383-126241525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3421913	chr8:126207819-126222864	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126142600-126231400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:126194200-126226000	Weak transcription	Ovary	ovary
3	chr8:126201200-126228200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:126201600-126224000	Weak transcription	Liver	Liver
5	chr8:126201600-126231200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:126201600-126231600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:126201600-126236600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:126201800-126226000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:126201800-126230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:126202200-126232200	Weak transcription	Primary B cells from cord blood	blood
11	chr8:126202600-126237400	Weak transcription	Fetal Thymus	thymus
12	chr8:126202800-126231600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:126203200-126231400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr8:126203800-126231000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:126204200-126226400	Weak transcription	Pancreas	Pancrea
16	chr8:126204200-126231000	Weak transcription	Brain Angular Gyrus	brain
17	chr8:126204200-126231200	Weak transcription	Brain Hippocampus Middle	brain
18	chr8:126204400-126224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:126204400-126225400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:126204400-126238600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:126204400-126239600	Weak transcription	Primary T cells from cord blood	blood
22	chr8:126205200-126224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:126205200-126231200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:126205400-126230000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:126214400-126225400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:126214400-126226000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr8:126214400-126226200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:126214400-126237400	Weak transcription	Thymus	Thymus
29	chr8:126214400-126238600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr8:126214600-126228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:126214600-126230800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr8:126214600-126231200	Weak transcription	Fetal Lung	lung
33	chr8:126214600-126231400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:126216800-126224200	Weak transcription	Stomach Mucosa	stomach
35	chr8:126217200-126226400	Weak transcription	Aorta	Aorta
36	chr8:126217200-126226400	Weak transcription	Gastric	stomach
37	chr8:126217400-126226000	Weak transcription	Hela-S3	cervix
38	chr8:126217400-126238600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:126217800-126230400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr8:126218000-126226000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr8:126218000-126226000	Weak transcription	Fetal Kidney	kidney
42	chr8:126218000-126231600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr8:126218800-126226400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:126219200-126224600	Weak transcription	Small Intestine	intestine
45	chr8:126219200-126225400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr8:126219800-126223000	Enhancers	GM12878-XiMat	blood
47	chr8:126220200-126223400	Weak transcription	Fetal Intestine Small	intestine
48	chr8:126220200-126223800	Weak transcription	Fetal Intestine Large	intestine
49	chr8:126220200-126223800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr8:126220200-126224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links