Variant report

Variant	rs11995477
Chromosome Location	chr8:126245812-126245813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126245389..126247253-chr8:126445841..126448736,2	MCF-7	breast:
2	chr8:126238474..126242182-chr8:126243434..126246858,3	K562	blood:
3	chr8:126239983..126246163-chr8:126440449..126448219,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10087220	1.00[AMR][1000 genomes]
rs10093674	1.00[AMR][1000 genomes]
rs10096127	1.00[AMR][1000 genomes]
rs10097806	0.86[AFR][1000 genomes]
rs10099782	1.00[AMR][1000 genomes]
rs10105404	0.87[AFR][1000 genomes]
rs10105823	0.84[AFR][1000 genomes]
rs10106955	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10107980	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs10108634	1.00[AMR][1000 genomes]
rs10110582	0.84[YRI][hapmap]
rs10481153	1.00[AMR][1000 genomes]
rs11985468	1.00[AMR][1000 genomes]
rs11988647	1.00[AMR][1000 genomes]
rs11990560	1.00[AMR][1000 genomes]
rs11998130	1.00[AMR][1000 genomes]
rs11998251	1.00[AMR][1000 genomes]
rs2384877	0.83[YRI][hapmap]
rs28374689	1.00[AMR][1000 genomes]
rs28412398	1.00[AMR][1000 genomes]
rs28481333	1.00[AMR][1000 genomes]
rs28516407	1.00[AMR][1000 genomes]
rs28702877	1.00[AMR][1000 genomes]
rs73349892	0.89[AFR][1000 genomes]
rs73704566	1.00[AMR][1000 genomes]
rs73704568	1.00[AMR][1000 genomes]
rs73704912	1.00[AMR][1000 genomes]
rs73704916	1.00[AMR][1000 genomes]
rs7826327	1.00[AMR][1000 genomes]
rs9297715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126226800-126260200	Weak transcription	Right Ventricle	heart
2	chr8:126233800-126249600	Weak transcription	Gastric	stomach
3	chr8:126233800-126264800	Weak transcription	Left Ventricle	heart
4	chr8:126237800-126246000	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:126238800-126253600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:126239600-126274000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr8:126239800-126246200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:126240400-126267000	Weak transcription	Primary T cells from cord blood	blood
9	chr8:126241000-126246000	Weak transcription	Ovary	ovary
10	chr8:126241000-126247000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:126241000-126250200	Weak transcription	Psoas Muscle	Psoas
12	chr8:126241200-126251200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:126241400-126258000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:126241600-126246800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:126242400-126246000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr8:126242400-126246000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr8:126242400-126246200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:126242800-126246000	Enhancers	Hela-S3	cervix
19	chr8:126243000-126260000	Weak transcription	GM12878-XiMat	blood
20	chr8:126243200-126267000	Weak transcription	Brain Angular Gyrus	brain
21	chr8:126243600-126253400	Weak transcription	Primary B cells from cord blood	blood
22	chr8:126243800-126246600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:126243800-126246800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:126243800-126246800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:126243800-126246800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr8:126243800-126246800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:126244200-126247000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:126244800-126247200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr8:126245400-126256200	Weak transcription	HSMM	muscle
30	chr8:126245600-126246200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr8:126245600-126246800	Weak transcription	A549	lung
32	chr8:126245600-126249400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr8:126245600-126249400	Weak transcription	Fetal Intestine Small	intestine
34	chr8:126245600-126249600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr8:126245600-126251800	Weak transcription	HepG2	liver
36	chr8:126245600-126269600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links