Variant report

Variant	rs10087220
Chromosome Location	chr8:126254317-126254318
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126251128..126255077-chr8:126440822..126444078,4	MCF-7	breast:
2	chr8:126252965..126254791-chr8:126262901..126264885,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10088674	1.00[EUR][1000 genomes]
rs10093674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096127	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10097356	1.00[EUR][1000 genomes]
rs10099782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10104564	1.00[EUR][1000 genomes]
rs10105848	1.00[EUR][1000 genomes]
rs10108634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109000	1.00[EUR][1000 genomes]
rs10481079	1.00[EUR][1000 genomes]
rs10481153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481154	1.00[EUR][1000 genomes]
rs11985468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11990560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11995477	1.00[AMR][1000 genomes]
rs11998130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11998251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16900466	1.00[EUR][1000 genomes]
rs28374689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28412398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421051	1.00[EUR][1000 genomes]
rs28481333	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28516407	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28609644	1.00[EUR][1000 genomes]
rs28702877	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58585963	1.00[EUR][1000 genomes]
rs73704566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704922	1.00[EUR][1000 genomes]
rs7826327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126226800-126260200	Weak transcription	Right Ventricle	heart
2	chr8:126233800-126264800	Weak transcription	Left Ventricle	heart
3	chr8:126239600-126274000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:126240400-126267000	Weak transcription	Primary T cells from cord blood	blood
5	chr8:126241400-126258000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:126243000-126260000	Weak transcription	GM12878-XiMat	blood
7	chr8:126243200-126267000	Weak transcription	Brain Angular Gyrus	brain
8	chr8:126245400-126256200	Weak transcription	HSMM	muscle
9	chr8:126245600-126269600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:126247200-126265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:126249600-126258000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr8:126250200-126265000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:126251400-126272000	Weak transcription	Fetal Intestine Small	intestine
14	chr8:126251600-126265000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr8:126251600-126265200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:126254000-126254400	Weak transcription	Primary B cells from cord blood	blood
17	chr8:126254000-126255000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr8:126254000-126270400	Weak transcription	Hela-S3	cervix
19	chr8:126254200-126256600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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