Variant report

Variant	rs28609644
Chromosome Location	chr8:126440512-126440513
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126409326..126412304-chr8:126440467..126442135,2	MCF-7	breast:
2	chr8:126289014..126291245-chr8:126440114..126442015,2	MCF-7	breast:
3	chr8:126361514..126365167-chr8:126440219..126443605,3	K562	blood:
4	chr8:126392836..126396701-chr8:126439754..126442098,3	MCF-7	breast:
5	chr8:126440357..126442550-chr8:126518210..126520213,2	K562	blood:
6	chr8:126136568..126138069-chr8:126439799..126441480,2	MCF-7	breast:
7	chr8:126367782..126370387-chr8:126440468..126442210,2	K562	blood:
8	chr8:126112294..126114961-chr8:126440449..126443868,3	MCF-7	breast:
9	chr8:126439520..126441495-chr8:126640041..126642897,2	MCF-7	breast:
10	chr8:126126335..126143313-chr8:126439680..126445836,35	MCF-7	breast:
11	chr8:126412879..126414831-chr8:126440456..126442134,2	MCF-7	breast:
12	chr8:126123096..126125735-chr8:126439490..126442539,3	MCF-7	breast:
13	chr8:126439858..126442559-chr8:126576058..126577661,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254431	Chromatin interaction
ENSG00000156831	Chromatin interaction

rs_ID	r²[population]
rs10087220	1.00[EUR][1000 genomes]
rs10088674	1.00[EUR][1000 genomes]
rs10093674	1.00[EUR][1000 genomes]
rs10096127	1.00[EUR][1000 genomes]
rs10097356	1.00[EUR][1000 genomes]
rs10099782	1.00[EUR][1000 genomes]
rs10104564	1.00[EUR][1000 genomes]
rs10105848	1.00[EUR][1000 genomes]
rs10106819	1.00[EUR][1000 genomes]
rs10106935	1.00[EUR][1000 genomes]
rs10106950	1.00[EUR][1000 genomes]
rs10107935	1.00[EUR][1000 genomes]
rs10108634	1.00[EUR][1000 genomes]
rs10109000	1.00[EUR][1000 genomes]
rs10111309	1.00[EUR][1000 genomes]
rs10481079	1.00[EUR][1000 genomes]
rs10481153	1.00[EUR][1000 genomes]
rs10481154	1.00[EUR][1000 genomes]
rs11985468	1.00[EUR][1000 genomes]
rs11988647	1.00[EUR][1000 genomes]
rs11990560	1.00[EUR][1000 genomes]
rs11998130	1.00[EUR][1000 genomes]
rs11998251	1.00[EUR][1000 genomes]
rs13439074	1.00[EUR][1000 genomes]
rs16900466	1.00[EUR][1000 genomes]
rs28374689	1.00[EUR][1000 genomes]
rs28412398	1.00[EUR][1000 genomes]
rs28421051	1.00[EUR][1000 genomes]
rs28481333	1.00[EUR][1000 genomes]
rs28516407	1.00[EUR][1000 genomes]
rs28617180	1.00[EUR][1000 genomes]
rs28629877	1.00[EUR][1000 genomes]
rs28676821	1.00[EUR][1000 genomes]
rs28702877	1.00[EUR][1000 genomes]
rs58585963	1.00[EUR][1000 genomes]
rs6985650	1.00[EUR][1000 genomes]
rs7015483	1.00[EUR][1000 genomes]
rs71516796	1.00[EUR][1000 genomes]
rs73704566	1.00[EUR][1000 genomes]
rs73704568	1.00[EUR][1000 genomes]
rs73704912	1.00[EUR][1000 genomes]
rs73704916	1.00[EUR][1000 genomes]
rs73704922	1.00[EUR][1000 genomes]
rs7817929	1.00[EUR][1000 genomes]
rs7826327	1.00[EUR][1000 genomes]
rs7826972	1.00[EUR][1000 genomes]
rs7844941	1.00[EUR][1000 genomes]
rs7845326	1.00[EUR][1000 genomes]
rs9297715	1.00[EUR][1000 genomes]

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126423400-126441200	Weak transcription	Right Atrium	heart
2	chr8:126430400-126441000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:126433000-126441200	Weak transcription	HMEC	breast
4	chr8:126435400-126441200	Weak transcription	GM12878-XiMat	blood
5	chr8:126436000-126441200	Weak transcription	Primary B cells from cord blood	blood
6	chr8:126436200-126441000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr8:126436400-126441200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:126436800-126440800	Weak transcription	K562	blood
9	chr8:126436800-126441400	Weak transcription	Ovary	ovary
10	chr8:126438200-126440600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:126438200-126441000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:126438200-126441000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:126438200-126441200	Enhancers	Colonic Mucosa	Colon
14	chr8:126438200-126441200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr8:126438400-126441200	Weak transcription	Lung	lung
16	chr8:126438600-126440600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr8:126438600-126441200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:126438600-126441200	Weak transcription	Left Ventricle	heart
19	chr8:126438800-126441200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr8:126438800-126441200	Enhancers	Hela-S3	cervix
21	chr8:126438800-126441400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:126438800-126441400	Weak transcription	Liver	Liver
23	chr8:126439000-126440600	Enhancers	Fetal Muscle Trunk	muscle
24	chr8:126439000-126441200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:126439000-126441400	Enhancers	Fetal Thymus	thymus
26	chr8:126439200-126441200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr8:126439200-126441400	Weak transcription	Esophagus	oesophagus
28	chr8:126439400-126441200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:126439400-126441200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:126439400-126441200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr8:126439600-126440800	Weak transcription	HUVEC	blood vessel
32	chr8:126439600-126441000	Weak transcription	Fetal Intestine Large	intestine
33	chr8:126439600-126441000	Weak transcription	Fetal Intestine Small	intestine
34	chr8:126439600-126441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:126439600-126441200	Weak transcription	Adipose Nuclei	Adipose
36	chr8:126439600-126441200	Weak transcription	Brain Hippocampus Middle	brain
37	chr8:126439800-126440800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:126439800-126440800	Weak transcription	Fetal Heart	heart
39	chr8:126439800-126440800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr8:126439800-126441000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:126439800-126441000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:126439800-126441000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr8:126439800-126441000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr8:126439800-126441000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:126439800-126441000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:126439800-126441000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:126439800-126441000	Weak transcription	Brain Germinal Matrix	brain
48	chr8:126439800-126441000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr8:126439800-126441000	Weak transcription	Fetal Brain Female	brain
50	chr8:126439800-126441000	Weak transcription	Fetal Stomach	stomach

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