Variant report

Variant	rs10111309
Chromosome Location	chr8:126475474-126475475
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:126475067-126475604	A549	lung:	n/a	chr8:126475338-126475351
2	CEBPD	chr8:126475165-126475602	K562	blood:	n/a	n/a
3	POLR2A	chr8:126475152-126476546	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr8:126475333-126475728	HCT-116	colon:	n/a	n/a
5	CEBPB	chr8:126475171-126475536	K562	blood:	n/a	chr8:126475338-126475351
6	TFAP2C	chr8:126475039-126475580	Hela-S3	cervix:	n/a	n/a
7	SMC3	chr8:126475097-126475616	Hela-S3	cervix:	n/a	n/a
8	EP300	chr8:126475161-126475587	Hela-S3	cervix:	n/a	n/a
9	IRF1	chr8:126475441-126475526	K562	blood:	n/a	n/a
10	TAF1	chr8:126475424-126475637	Hela-S3	cervix:	n/a	n/a
11	ELF1	chr8:126475325-126475704	K562	blood:	n/a	chr8:126475545-126475558 chr8:126475547-126475558
12	CEBPB	chr8:126474833-126475791	HCT-116	colon:	n/a	chr8:126475338-126475351
13	ZKSCAN1	chr8:126475181-126475543	Hela-S3	cervix:	n/a	n/a
14	BRCA1	chr8:126475144-126475639	Hela-S3	cervix:	n/a	n/a
15	TBP	chr8:126475129-126475702	Hela-S3	cervix:	n/a	n/a
16	CEBPB	chr8:126475187-126475497	HepG2	liver:	n/a	chr8:126475338-126475351
17	GTF2F1	chr8:126475192-126475692	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr8:126475230-126475847	Hela-S3	cervix:	n/a	n/a
19	ELF1	chr8:126475044-126475766	HCT-116	colon:	n/a	chr8:126475545-126475558 chr8:126475547-126475558
20	RCOR1	chr8:126475175-126475594	Hela-S3	cervix:	n/a	n/a
21	RAD21	chr8:126475172-126475590	Hela-S3	cervix:	n/a	n/a
22	STAT3	chr8:126475212-126475543	Hela-S3	cervix:	n/a	chr8:126475410-126475418
23	POLR2A	chr8:126475035-126475737	HCT-116	colon:	n/a	n/a
24	CEBPB	chr8:126475082-126475658	Hela-S3	cervix:	n/a	chr8:126475338-126475351
25	GTF3C2	chr8:126475093-126475676	Hela-S3	cervix:	n/a	n/a
26	ELF1	chr8:126475432-126475628	HepG2	liver:	n/a	chr8:126475545-126475558 chr8:126475547-126475558
27	POLR2A	chr8:126475366-126475876	Hela-S3	cervix:	n/a	n/a
28	MAX	chr8:126475134-126475600	Hela-S3	cervix:	n/a	n/a
29	RPC155	chr8:126475292-126476293	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr8:126475241-126476002	Hela-S3	cervix:	n/a	n/a
31	RFX5	chr8:126474998-126475636	Hela-S3	cervix:	n/a	n/a
32	CHD2	chr8:126475133-126475501	Hela-S3	cervix:	n/a	n/a
33	CEBPB	chr8:126475124-126475524	K562	blood:	n/a	chr8:126475338-126475351
34	TCF7L2	chr8:126475128-126475537	Hela-S3	cervix:	n/a	n/a
35	MXI1	chr8:126475113-126475551	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126464119..126465895-chr8:126475032..126477727,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253111	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10088674	1.00[EUR][1000 genomes]
rs10093674	1.00[EUR][1000 genomes]
rs10097356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101581	1.00[AMR][1000 genomes]
rs10104564	1.00[EUR][1000 genomes]
rs10105848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106819	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106935	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107935	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10108634	1.00[EUR][1000 genomes]
rs10109000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481079	1.00[EUR][1000 genomes]
rs10481153	1.00[EUR][1000 genomes]
rs10481154	1.00[EUR][1000 genomes]
rs11985468	1.00[EUR][1000 genomes]
rs11988647	1.00[EUR][1000 genomes]
rs11990560	1.00[EUR][1000 genomes]
rs13439074	1.00[EUR][1000 genomes]
rs28374689	1.00[EUR][1000 genomes]
rs28412398	1.00[EUR][1000 genomes]
rs28421051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28422055	1.00[AMR][1000 genomes]
rs28481333	1.00[EUR][1000 genomes]
rs28609644	1.00[EUR][1000 genomes]
rs28617180	1.00[EUR][1000 genomes]
rs28629877	1.00[EUR][1000 genomes]
rs28676821	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28702877	1.00[EUR][1000 genomes]
rs58585963	1.00[EUR][1000 genomes]
rs58966508	1.00[EUR][1000 genomes]
rs6985650	1.00[EUR][1000 genomes]
rs7005006	1.00[AMR][1000 genomes]
rs7015483	1.00[EUR][1000 genomes]
rs71516796	1.00[EUR][1000 genomes]
rs73704566	1.00[EUR][1000 genomes]
rs73704568	1.00[EUR][1000 genomes]
rs73704912	1.00[EUR][1000 genomes]
rs73704916	1.00[EUR][1000 genomes]
rs73704922	1.00[EUR][1000 genomes]
rs73704998	1.00[AMR][1000 genomes]
rs7817929	1.00[EUR][1000 genomes]
rs7826327	1.00[EUR][1000 genomes]
rs7826972	1.00[EUR][1000 genomes]
rs7844941	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7845326	1.00[EUR][1000 genomes]
rs9297715	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126464800-126478000	Weak transcription	Gastric	stomach
2	chr8:126465200-126477800	Weak transcription	Fetal Heart	heart
3	chr8:126472400-126479000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:126475000-126475600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:126475000-126475600	Flanking Active TSS	Hela-S3	cervix
6	chr8:126475000-126476600	Enhancers	Fetal Lung	lung
7	chr8:126475200-126475600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr8:126475200-126475600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr8:126475200-126475600	Flanking Active TSS	HepG2	liver
10	chr8:126475200-126475600	Enhancers	K562	blood
11	chr8:126475200-126475600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr8:126475400-126475600	Enhancers	Adipose Nuclei	Adipose
13	chr8:126475400-126475800	Flanking Active TSS	Placenta	Placenta
14	chr8:126475400-126476000	Active TSS	Liver	Liver
15	chr8:126475400-126477600	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:126475400-126479200	Weak transcription	A549	lung

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