Variant report

Variant	rs10104564
Chromosome Location	chr8:126438326-126438327
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:126438082-126438384	MCF10A-Er-Src	breast:	n/a	n/a
2	EP300	chr8:126438124-126438377	Hela-S3	cervix:	n/a	n/a
3	REST	chr8:126437896-126438425	PFSK-1	brain:	n/a	n/a
4	STAT3	chr8:126438093-126438476	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr8:126438088-126438441	MCF10A-Er-Src	breast:	n/a	n/a
6	REST	chr8:126438066-126438386	Hela-S3	cervix:	n/a	n/a
7	GATA2	chr8:126438009-126438610	HUVEC	blood vessel:	n/a	n/a
8	RCOR1	chr8:126438028-126438437	Hela-S3	cervix:	n/a	n/a
9	RAD21	chr8:126437865-126440046	HCT-116	colon:	n/a	n/a
10	FOS	chr8:126438024-126438438	MCF10A-Er-Src	breast:	n/a	chr8:126438198-126438209
11	STAT3	chr8:126438086-126438356	MCF10A-Er-Src	breast:	n/a	n/a
12	REST	chr8:126437953-126438408	PFSK-1	brain:	n/a	n/a
13	MYC	chr8:126438054-126438327	HUVEC	blood vessel:	n/a	n/a
14	MAX	chr8:126438067-126438436	Hela-S3	cervix:	n/a	n/a
15	SMC3	chr8:126438090-126438706	Hela-S3	cervix:	n/a	n/a
16	MAZ	chr8:126438113-126438424	Hela-S3	cervix:	n/a	n/a
17	FOS	chr8:126438087-126438379	MCF10A-Er-Src	breast:	n/a	chr8:126438198-126438209
18	STAT3	chr8:126438048-126438417	MCF10A-Er-Src	breast:	n/a	n/a
19	FOS	chr8:126438024-126438476	MCF10A-Er-Src	breast:	n/a	chr8:126438198-126438209
20	POLR2A	chr8:126437941-126438509	HUVEC	blood vessel:	n/a	n/a
21	RAD21	chr8:126438116-126438423	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr8:126438009-126438522	HCT-116	colon:	n/a	n/a
23	TCF7L2	chr8:126438024-126438526	Hela-S3	cervix:	n/a	n/a
24	E2F4	chr8:126438105-126438405	MCF10A-Er-Src	breast:	n/a	n/a
25	MYC	chr8:126438084-126438442	MCF10A-Er-Src	breast:	n/a	n/a
26	POLR2A	chr8:126438009-126438336	HUVEC	blood vessel:	n/a	n/a
27	FOS	chr8:126438069-126438393	MCF10A-Er-Src	breast:	n/a	chr8:126438198-126438209
28	FOS	chr8:126437993-126438384	HUVEC	blood vessel:	n/a	chr8:126438198-126438209
29	POLR2A	chr8:126437981-126438480	HCT-116	colon:	n/a	n/a
30	CHD2	chr8:126438167-126438551	Hela-S3	cervix:	n/a	n/a
31	TCF7L2	chr8:126438025-126438429	HCT-116	colon:	n/a	n/a
32	ZKSCAN1	chr8:126438056-126438745	Hela-S3	cervix:	n/a	n/a
33	ELK1	chr8:126438132-126438331	Hela-S3	cervix:	n/a	n/a
34	YY1	chr8:126438080-126438428	HCT-116	colon:	n/a	n/a
35	STAT3	chr8:126438082-126438452	MCF10A-Er-Src	breast:	n/a	n/a
36	RFX5	chr8:126438145-126438380	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:126364442..126366316-chr8:126435893..126438793,2	K562	blood:
2	chr8:126412429..126413958-chr8:126437402..126438965,2	MCF-7	breast:
3	chr8:126191655..126193648-chr8:126438129..126439880,2	MCF-7	breast:
4	chr8:126435775..126439025-chr8:126439650..126442842,6	K562	blood:
5	chr8:126425069..126427223-chr8:126437128..126439624,2	K562	blood:
6	chr8:126423668..126425842-chr8:126436681..126438719,2	MCF-7	breast:

Variant related genes	Relation type
TRIB1	TF binding region
ENSG00000173334	Chromatin interaction

rs_ID	r²[population]
rs10087220	1.00[EUR][1000 genomes]
rs10088674	1.00[EUR][1000 genomes]
rs10093674	1.00[EUR][1000 genomes]
rs10096127	1.00[EUR][1000 genomes]
rs10097356	1.00[EUR][1000 genomes]
rs10099782	1.00[EUR][1000 genomes]
rs10105848	1.00[EUR][1000 genomes]
rs10106819	1.00[EUR][1000 genomes]
rs10106935	1.00[EUR][1000 genomes]
rs10106950	1.00[EUR][1000 genomes]
rs10107935	1.00[EUR][1000 genomes]
rs10108634	1.00[EUR][1000 genomes]
rs10109000	1.00[EUR][1000 genomes]
rs10111309	1.00[EUR][1000 genomes]
rs10481079	1.00[EUR][1000 genomes]
rs10481153	1.00[EUR][1000 genomes]
rs10481154	1.00[EUR][1000 genomes]
rs11985468	1.00[EUR][1000 genomes]
rs11988647	1.00[EUR][1000 genomes]
rs11990560	1.00[EUR][1000 genomes]
rs11998130	1.00[EUR][1000 genomes]
rs11998251	1.00[EUR][1000 genomes]
rs13439074	1.00[EUR][1000 genomes]
rs16900466	1.00[EUR][1000 genomes]
rs28374689	1.00[EUR][1000 genomes]
rs28412398	1.00[EUR][1000 genomes]
rs28421051	1.00[EUR][1000 genomes]
rs28441126	0.81[AFR][1000 genomes]
rs28481333	1.00[EUR][1000 genomes]
rs28516407	1.00[EUR][1000 genomes]
rs28609644	1.00[EUR][1000 genomes]
rs28617180	1.00[EUR][1000 genomes]
rs28629877	1.00[EUR][1000 genomes]
rs28676821	1.00[EUR][1000 genomes]
rs28702877	1.00[EUR][1000 genomes]
rs58585963	1.00[EUR][1000 genomes]
rs6985650	1.00[EUR][1000 genomes]
rs7015483	1.00[EUR][1000 genomes]
rs71516796	1.00[EUR][1000 genomes]
rs73704566	1.00[EUR][1000 genomes]
rs73704568	1.00[EUR][1000 genomes]
rs73704912	1.00[EUR][1000 genomes]
rs73704916	1.00[EUR][1000 genomes]
rs73704922	1.00[EUR][1000 genomes]
rs7817929	1.00[EUR][1000 genomes]
rs7826327	1.00[EUR][1000 genomes]
rs7826972	1.00[EUR][1000 genomes]
rs7844941	1.00[EUR][1000 genomes]
rs7845326	1.00[EUR][1000 genomes]
rs9297715	1.00[EUR][1000 genomes]

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126423400-126441200	Weak transcription	Right Atrium	heart
2	chr8:126426000-126439200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:126429000-126438600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:126429000-126439200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:126429400-126439000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:126429600-126438800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:126430000-126438400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:126430200-126438400	Weak transcription	Adipose Nuclei	Adipose
9	chr8:126430400-126441000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:126432000-126439400	Weak transcription	Fetal Stomach	stomach
11	chr8:126433000-126441200	Weak transcription	HMEC	breast
12	chr8:126433600-126439400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:126434000-126440200	Weak transcription	Spleen	Spleen
14	chr8:126435200-126438400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:126435200-126438600	Enhancers	Hela-S3	cervix
16	chr8:126435400-126441200	Weak transcription	GM12878-XiMat	blood
17	chr8:126435600-126439000	Weak transcription	Fetal Thymus	thymus
18	chr8:126435600-126439600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr8:126436000-126441200	Weak transcription	Primary B cells from cord blood	blood
20	chr8:126436200-126438800	Enhancers	Liver	Liver
21	chr8:126436200-126441000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr8:126436400-126441200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr8:126436800-126440800	Weak transcription	K562	blood
24	chr8:126436800-126441400	Weak transcription	Ovary	ovary
25	chr8:126437400-126439600	Enhancers	HUVEC	blood vessel
26	chr8:126438000-126438400	Enhancers	Lung	lung
27	chr8:126438000-126438600	Enhancers	HepG2	liver
28	chr8:126438000-126438800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:126438000-126439200	Enhancers	A549	lung
30	chr8:126438000-126439800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:126438000-126439800	Enhancers	Duodenum Mucosa	Duodenum
32	chr8:126438000-126440200	Enhancers	NHEK	skin
33	chr8:126438200-126438400	Enhancers	Esophagus	oesophagus
34	chr8:126438200-126439800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr8:126438200-126440400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:126438200-126440400	Enhancers	Pancreas	Pancrea
37	chr8:126438200-126440600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:126438200-126441000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:126438200-126441000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr8:126438200-126441200	Enhancers	Colonic Mucosa	Colon
41	chr8:126438200-126441200	Enhancers	Rectal Mucosa Donor 31	rectum

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