Variant report

Variant	rs7844941
Chromosome Location	chr8:126500988-126500989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126487669..126490463-chr8:126500662..126505453,4	MCF-7	breast:
2	chr8:126488058..126489576-chr8:126500538..126503490,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10088674	1.00[EUR][1000 genomes]
rs10093674	1.00[EUR][1000 genomes]
rs10097356	1.00[EUR][1000 genomes]
rs10098591	1.00[AMR][1000 genomes]
rs10104564	1.00[EUR][1000 genomes]
rs10105848	1.00[EUR][1000 genomes]
rs10106819	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10106935	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10106950	1.00[EUR][1000 genomes]
rs10107935	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109000	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs10111309	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10481079	1.00[EUR][1000 genomes]
rs10481153	1.00[EUR][1000 genomes]
rs10481154	1.00[EUR][1000 genomes]
rs11985468	1.00[EUR][1000 genomes]
rs11988647	1.00[EUR][1000 genomes]
rs11990560	1.00[EUR][1000 genomes]
rs13439074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28374689	1.00[EUR][1000 genomes]
rs28412398	1.00[EUR][1000 genomes]
rs28421051	1.00[EUR][1000 genomes]
rs28609644	1.00[EUR][1000 genomes]
rs28617180	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28629877	1.00[EUR][1000 genomes]
rs28676821	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58585963	1.00[EUR][1000 genomes]
rs58966508	1.00[EUR][1000 genomes]
rs6985650	1.00[EUR][1000 genomes]
rs7015483	1.00[EUR][1000 genomes]
rs71516796	1.00[EUR][1000 genomes]
rs73704568	1.00[EUR][1000 genomes]
rs73704912	1.00[EUR][1000 genomes]
rs73704916	1.00[EUR][1000 genomes]
rs73704922	1.00[EUR][1000 genomes]
rs7817929	1.00[EUR][1000 genomes]
rs7826972	1.00[EUR][1000 genomes]
rs7845326	1.00[EUR][1000 genomes]
rs9297715	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126496600-126503000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:126497200-126501800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:126497600-126501600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:126497800-126501600	Weak transcription	NHEK	skin
5	chr8:126498600-126509200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:126498600-126509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:126499000-126503200	Weak transcription	Primary B cells from cord blood	blood
8	chr8:126499400-126503000	Weak transcription	Placenta	Placenta
9	chr8:126500200-126502000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr8:126500400-126501000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:126500400-126502000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:126500600-126501600	Weak transcription	Liver	Liver
13	chr8:126500600-126502000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr8:126500800-126502200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:126500800-126502200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links