Variant report

Variant	rs10106935
Chromosome Location	chr8:126484732-126484733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126479289..126481809-chr8:126483424..126485504,2	K562	blood:
2	chr8:126479289..126481809-chr8:126483424..126485504,3	K562	blood:
3	chr8:126439120..126443279-chr8:126483208..126489107,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10088674	1.00[EUR][1000 genomes]
rs10093674	1.00[EUR][1000 genomes]
rs10097356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101581	1.00[AMR][1000 genomes]
rs10104564	1.00[EUR][1000 genomes]
rs10105848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106819	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107935	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10108634	1.00[EUR][1000 genomes]
rs10109000	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111309	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481079	1.00[EUR][1000 genomes]
rs10481153	1.00[EUR][1000 genomes]
rs10481154	1.00[EUR][1000 genomes]
rs11985468	1.00[EUR][1000 genomes]
rs11988647	1.00[EUR][1000 genomes]
rs11990560	1.00[EUR][1000 genomes]
rs13439074	1.00[EUR][1000 genomes]
rs28374689	1.00[EUR][1000 genomes]
rs28412398	1.00[EUR][1000 genomes]
rs28421051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28422055	1.00[AMR][1000 genomes]
rs28609644	1.00[EUR][1000 genomes]
rs28617180	1.00[EUR][1000 genomes]
rs28629877	1.00[EUR][1000 genomes]
rs28676821	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58585963	1.00[EUR][1000 genomes]
rs58966508	1.00[EUR][1000 genomes]
rs6985650	1.00[EUR][1000 genomes]
rs7005006	1.00[AMR][1000 genomes]
rs7015483	1.00[EUR][1000 genomes]
rs71516796	1.00[EUR][1000 genomes]
rs73704568	1.00[EUR][1000 genomes]
rs73704912	1.00[EUR][1000 genomes]
rs73704916	1.00[EUR][1000 genomes]
rs73704922	1.00[EUR][1000 genomes]
rs73704998	1.00[AMR][1000 genomes]
rs7817929	1.00[EUR][1000 genomes]
rs7826327	1.00[EUR][1000 genomes]
rs7826972	1.00[EUR][1000 genomes]
rs7844941	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7845326	1.00[EUR][1000 genomes]
rs9297715	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126477400-126485000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:126479400-126487400	Weak transcription	Liver	Liver
3	chr8:126479400-126489200	Weak transcription	Pancreas	Pancrea
4	chr8:126482800-126487000	Weak transcription	Placenta	Placenta
5	chr8:126483000-126486000	Weak transcription	Lung	lung
6	chr8:126483000-126487400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:126483000-126489400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:126483000-126498200	Weak transcription	Right Atrium	heart
9	chr8:126483200-126486400	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:126483200-126486800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:126483200-126487000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:126483200-126487200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:126483200-126487600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:126483200-126489000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:126483200-126489400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:126483400-126485600	Weak transcription	NH-A	brain
17	chr8:126483400-126485800	Weak transcription	Fetal Kidney	kidney
18	chr8:126483400-126486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:126483400-126487000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:126483400-126496600	Weak transcription	Hela-S3	cervix
21	chr8:126483800-126485400	Weak transcription	A549	lung
22	chr8:126484000-126485600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:126484200-126485800	Weak transcription	HMEC	breast
24	chr8:126484200-126485800	Weak transcription	NHEK	skin
25	chr8:126484400-126486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:126484600-126485800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links