Variant report

Variant	rs71516796
Chromosome Location	chr8:126560596-126560597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126560257..126563097-chr8:126568115..126570900,3	MCF-7	breast:
2	chr8:126136833..126139565-chr8:126560076..126562610,2	MCF-7	breast:
3	chr8:126559888..126562095-chr8:126587973..126591145,3	MCF-7	breast:
4	chr8:126559443..126561983-chr8:126563949..126568094,3	K562	blood:
5	chr8:126560298..126562187-chr8:126568601..126571479,2	K562	blood:
6	chr8:126440547..126448575-chr8:126554364..126560769,21	MCF-7	breast:
7	chr8:126559328..126561983-chr8:126565618..126568094,2	K562	blood:
8	chr8:126559583..126561095-chr8:126580080..126582258,2	MCF-7	breast:
9	chr8:126559577..126563318-chr8:126564995..126567756,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10097356	1.00[EUR][1000 genomes]
rs10104564	1.00[EUR][1000 genomes]
rs10105848	1.00[EUR][1000 genomes]
rs10106819	1.00[EUR][1000 genomes]
rs10106935	1.00[EUR][1000 genomes]
rs10106950	1.00[EUR][1000 genomes]
rs10107935	1.00[EUR][1000 genomes]
rs10109000	1.00[EUR][1000 genomes]
rs10111309	1.00[EUR][1000 genomes]
rs13439074	1.00[EUR][1000 genomes]
rs28421051	1.00[EUR][1000 genomes]
rs28609644	1.00[EUR][1000 genomes]
rs28617180	1.00[EUR][1000 genomes]
rs28629877	1.00[EUR][1000 genomes]
rs28676821	1.00[EUR][1000 genomes]
rs58966508	1.00[EUR][1000 genomes]
rs6985650	1.00[EUR][1000 genomes]
rs7015483	1.00[EUR][1000 genomes]
rs7817929	1.00[EUR][1000 genomes]
rs7826972	1.00[EUR][1000 genomes]
rs7844941	1.00[EUR][1000 genomes]
rs7845326	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126556000-126561400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:126558400-126561600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:126558400-126568400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:126558800-126563000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr8:126559000-126561200	Weak transcription	Brain Hippocampus Middle	brain
6	chr8:126559400-126561000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:126559400-126561200	Weak transcription	Fetal Kidney	kidney
8	chr8:126559600-126566200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:126559800-126566000	Weak transcription	Osteobl	bone
10	chr8:126559800-126567800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:126560000-126561200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:126560000-126561200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:126560000-126561200	Weak transcription	NHLF	lung
14	chr8:126560000-126563000	Weak transcription	Liver	Liver
15	chr8:126560000-126566000	Weak transcription	NH-A	brain
16	chr8:126560000-126567800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:126560200-126561000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:126560200-126561200	Weak transcription	Ovary	ovary
19	chr8:126560200-126561400	Enhancers	A549	lung
20	chr8:126560200-126561400	Weak transcription	NHEK	skin
21	chr8:126560200-126568200	Weak transcription	HMEC	breast
22	chr8:126560200-126568400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:126560400-126561400	Weak transcription	Hela-S3	cervix

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