Variant report

Variant	rs10097356
Chromosome Location	chr8:126453864-126453865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:126453809-126454547	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126453555..126455063-chr8:126584275..126586099,2	MCF-7	breast:
2	chr8:126452402..126454551-chr8:126832949..126835244,2	K562	blood:

Variant related genes	Relation type
RN7SL590P	TF binding region

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10087220	1.00[EUR][1000 genomes]
rs10088674	1.00[EUR][1000 genomes]
rs10093674	1.00[EUR][1000 genomes]
rs10096127	1.00[EUR][1000 genomes]
rs10099782	1.00[EUR][1000 genomes]
rs10101581	1.00[AMR][1000 genomes]
rs10104564	1.00[EUR][1000 genomes]
rs10105848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107935	1.00[EUR][1000 genomes]
rs10108634	1.00[EUR][1000 genomes]
rs10109000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481079	1.00[EUR][1000 genomes]
rs10481153	1.00[EUR][1000 genomes]
rs10481154	1.00[EUR][1000 genomes]
rs11985468	1.00[EUR][1000 genomes]
rs11988647	1.00[EUR][1000 genomes]
rs11990560	1.00[EUR][1000 genomes]
rs11998130	1.00[EUR][1000 genomes]
rs11998251	1.00[EUR][1000 genomes]
rs13439074	1.00[EUR][1000 genomes]
rs16900466	1.00[EUR][1000 genomes]
rs28374689	1.00[EUR][1000 genomes]
rs28412398	1.00[EUR][1000 genomes]
rs28421051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28422055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28481333	1.00[EUR][1000 genomes]
rs28516407	1.00[EUR][1000 genomes]
rs28609644	1.00[EUR][1000 genomes]
rs28617180	1.00[EUR][1000 genomes]
rs28629877	1.00[EUR][1000 genomes]
rs28676821	1.00[EUR][1000 genomes]
rs28702877	1.00[EUR][1000 genomes]
rs58585963	1.00[EUR][1000 genomes]
rs58966508	1.00[EUR][1000 genomes]
rs6985650	1.00[EUR][1000 genomes]
rs7005006	1.00[AMR][1000 genomes]
rs7015483	1.00[EUR][1000 genomes]
rs71516796	1.00[EUR][1000 genomes]
rs73704566	1.00[EUR][1000 genomes]
rs73704568	1.00[EUR][1000 genomes]
rs73704912	1.00[EUR][1000 genomes]
rs73704916	1.00[EUR][1000 genomes]
rs73704922	1.00[EUR][1000 genomes]
rs73704998	1.00[AMR][1000 genomes]
rs7817929	1.00[EUR][1000 genomes]
rs7826327	1.00[EUR][1000 genomes]
rs7826972	1.00[EUR][1000 genomes]
rs7844941	1.00[EUR][1000 genomes]
rs7845326	1.00[EUR][1000 genomes]
rs9297715	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328739	chr8:126452520-126454568	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126447000-126458800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:126448600-126457800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:126448600-126458600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:126449000-126459000	Weak transcription	HSMM	muscle
5	chr8:126449200-126457200	Weak transcription	Fetal Heart	heart
6	chr8:126449400-126458600	Weak transcription	Esophagus	oesophagus
7	chr8:126450600-126457600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:126450600-126463800	Weak transcription	Hela-S3	cervix
9	chr8:126450800-126454600	Weak transcription	Pancreas	Pancrea
10	chr8:126450800-126457000	Weak transcription	K562	blood
11	chr8:126450800-126457200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:126450800-126457400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:126450800-126457600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:126450800-126457800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:126450800-126458000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr8:126450800-126458600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:126450800-126458800	Weak transcription	Fetal Stomach	stomach
18	chr8:126451000-126454400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:126451000-126454600	Weak transcription	Primary B cells from cord blood	blood
20	chr8:126451000-126457000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:126451000-126457400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr8:126451000-126457600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:126451000-126458400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:126451000-126462400	Weak transcription	Liver	Liver
25	chr8:126451200-126454400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:126451200-126458200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr8:126451600-126457600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:126452000-126457800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:126452200-126457200	Weak transcription	Right Ventricle	heart
30	chr8:126452200-126457400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:126452200-126457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:126452200-126457800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:126452200-126457800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:126452200-126457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:126452200-126457800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr8:126452200-126458400	Weak transcription	Right Atrium	heart
37	chr8:126452400-126455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:126452400-126455800	Weak transcription	Fetal Kidney	kidney
39	chr8:126452400-126457000	Weak transcription	Placenta	Placenta
40	chr8:126452400-126458000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr8:126452400-126458800	Weak transcription	Psoas Muscle	Psoas
42	chr8:126452400-126464400	Weak transcription	Spleen	Spleen
43	chr8:126452600-126459400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:126452800-126457800	Weak transcription	Left Ventricle	heart
45	chr8:126452800-126462800	Weak transcription	A549	lung
46	chr8:126453000-126455600	Weak transcription	HepG2	liver
47	chr8:126453000-126457200	Weak transcription	NH-A	brain
48	chr8:126453000-126464000	Weak transcription	NHEK	skin
49	chr8:126453200-126454600	Weak transcription	Fetal Muscle Leg	muscle
50	chr8:126453200-126457200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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