Variant report

Variant	rs10109000
Chromosome Location	chr8:126460710-126460711
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126454288..126457067-chr8:126458525..126461790,3	MCF-7	breast:
2	chr8:126460427..126462141-chr8:126462382..126464156,2	K562	blood:
3	chr8:126459529..126461149-chr8:126475843..126477879,2	K562	blood:
4	chr8:126447250..126449924-chr8:126458992..126464226,4	MCF-7	breast:
5	chr8:126457512..126459381-chr8:126460479..126462952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266452	Chromatin interaction

rs_ID	r²[population]
rs10087220	1.00[EUR][1000 genomes]
rs10088674	1.00[EUR][1000 genomes]
rs10093674	1.00[EUR][1000 genomes]
rs10096127	1.00[EUR][1000 genomes]
rs10097356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10099782	1.00[EUR][1000 genomes]
rs10101581	1.00[AMR][1000 genomes]
rs10104564	1.00[EUR][1000 genomes]
rs10105848	0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106819	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106935	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107935	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs10108634	1.00[EUR][1000 genomes]
rs10111309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481079	1.00[EUR][1000 genomes]
rs10481153	1.00[EUR][1000 genomes]
rs10481154	1.00[EUR][1000 genomes]
rs11985468	1.00[EUR][1000 genomes]
rs11988647	1.00[EUR][1000 genomes]
rs11990560	1.00[EUR][1000 genomes]
rs11998130	1.00[EUR][1000 genomes]
rs11998251	1.00[EUR][1000 genomes]
rs13439074	1.00[EUR][1000 genomes]
rs16900466	1.00[EUR][1000 genomes]
rs28374689	1.00[EUR][1000 genomes]
rs28412398	1.00[EUR][1000 genomes]
rs28421051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28422055	1.00[AMR][1000 genomes]
rs28481333	1.00[EUR][1000 genomes]
rs28516407	1.00[EUR][1000 genomes]
rs28609644	1.00[EUR][1000 genomes]
rs28617180	1.00[EUR][1000 genomes]
rs28629877	1.00[EUR][1000 genomes]
rs28676821	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28702877	1.00[EUR][1000 genomes]
rs58585963	1.00[EUR][1000 genomes]
rs58966508	1.00[EUR][1000 genomes]
rs6985650	1.00[EUR][1000 genomes]
rs7005006	1.00[AMR][1000 genomes]
rs7015483	1.00[EUR][1000 genomes]
rs71516796	1.00[EUR][1000 genomes]
rs73704566	1.00[EUR][1000 genomes]
rs73704568	1.00[EUR][1000 genomes]
rs73704912	1.00[EUR][1000 genomes]
rs73704916	1.00[EUR][1000 genomes]
rs73704922	1.00[EUR][1000 genomes]
rs73704998	1.00[AMR][1000 genomes]
rs7817929	1.00[EUR][1000 genomes]
rs7826327	1.00[EUR][1000 genomes]
rs7826972	1.00[EUR][1000 genomes]
rs7844941	1.00[EUR][1000 genomes]
rs7845326	1.00[EUR][1000 genomes]
rs9297715	1.00[EUR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126450600-126463800	Weak transcription	Hela-S3	cervix
2	chr8:126451000-126462400	Weak transcription	Liver	Liver
3	chr8:126452400-126464400	Weak transcription	Spleen	Spleen
4	chr8:126452800-126462800	Weak transcription	A549	lung
5	chr8:126453000-126464000	Weak transcription	NHEK	skin
6	chr8:126453200-126464000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:126453200-126464400	Weak transcription	Lung	lung
8	chr8:126459400-126464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:126459400-126464000	Weak transcription	Psoas Muscle	Psoas
10	chr8:126459600-126464000	Weak transcription	Placenta	Placenta
11	chr8:126459600-126464200	Weak transcription	NH-A	brain
12	chr8:126459600-126464400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:126459800-126464000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:126459800-126464000	Weak transcription	Osteobl	bone
15	chr8:126459800-126464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:126459800-126464200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:126459800-126464200	Weak transcription	Esophagus	oesophagus
18	chr8:126459800-126464200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:126459800-126466400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:126460000-126460800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr8:126460000-126461000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr8:126460000-126464200	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:126460000-126464200	Weak transcription	Left Ventricle	heart
24	chr8:126460000-126464200	Weak transcription	Right Ventricle	heart
25	chr8:126460400-126464000	Weak transcription	Fetal Heart	heart
26	chr8:126460600-126460800	Enhancers	HepG2	liver
27	chr8:126460600-126464200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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