Variant report

Variant	rs7005006
Chromosome Location	chr8:126564572-126564573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126559443..126561983-chr8:126563949..126568094,3	K562	blood:
2	chr8:126564348..126566155-chr8:126569161..126571081,2	K562	blood:
3	chr8:126441669..126443393-chr8:126564022..126566061,2	MCF-7	breast:
4	chr8:126442386..126445249-chr8:126561859..126564622,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10097356	1.00[AMR][1000 genomes]
rs10098591	1.00[YRI][hapmap]
rs10101581	1.00[AMR][1000 genomes]
rs10105848	1.00[AMR][1000 genomes]
rs10106819	1.00[AMR][1000 genomes]
rs10106935	1.00[AMR][1000 genomes]
rs10106950	1.00[AMR][1000 genomes]
rs10109000	1.00[AMR][1000 genomes]
rs10111309	1.00[AMR][1000 genomes]
rs28421051	1.00[AMR][1000 genomes]
rs28422055	1.00[AMR][1000 genomes]
rs73704998	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126558400-126568400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:126559600-126566200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:126559800-126566000	Weak transcription	Osteobl	bone
4	chr8:126559800-126567800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:126560000-126566000	Weak transcription	NH-A	brain
6	chr8:126560000-126567800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:126560200-126568200	Weak transcription	HMEC	breast
8	chr8:126560200-126568400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:126561400-126566600	Weak transcription	A549	lung
10	chr8:126561400-126568200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:126561800-126568600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:126562000-126566000	Weak transcription	NHLF	lung
13	chr8:126562000-126567600	Weak transcription	NHEK	skin
14	chr8:126562000-126568200	Weak transcription	Ovary	ovary
15	chr8:126562000-126568400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:126562000-126568400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:126562600-126568400	Weak transcription	Brain Anterior Caudate	brain
18	chr8:126562600-126568800	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:126563800-126567600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:126563800-126568400	Weak transcription	Brain Substantia Nigra	brain
21	chr8:126563800-126568800	Weak transcription	Liver	Liver
22	chr8:126563800-126568800	Weak transcription	Brain Inferior Temporal Lobe	brain

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