Variant report

Variant	rs10956254
Chromosome Location	chr8:126645347-126645348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11997051	0.80[ASN][1000 genomes]
rs12549603	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13273592	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1551393	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16900755	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2124034	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2124036	0.81[ASN][1000 genomes]
rs3860846	0.86[ASN][1000 genomes]
rs3860847	0.87[ASN][1000 genomes]
rs3860848	0.87[ASN][1000 genomes]
rs3887251	0.87[ASN][1000 genomes]
rs4871624	0.90[EUR][1000 genomes]
rs7009673	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7826687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10956254	MTSS1	cis	parietal	SCAN
rs10956254	TRIB1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126628800-126649400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126638400-126648800	Weak transcription	Spleen	Spleen
3	chr8:126639600-126653600	Weak transcription	Pancreas	Pancrea
4	chr8:126640800-126649200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:126640800-126649200	Weak transcription	NHEK	skin
6	chr8:126644200-126649200	Weak transcription	Fetal Lung	lung
7	chr8:126645200-126646200	Enhancers	Adipose Nuclei	Adipose
8	chr8:126645200-126646200	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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