Variant report

Variant	rs3887251
Chromosome Location	chr8:126633554-126633555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10755927	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10956254	0.87[ASN][1000 genomes]
rs12549603	0.99[ASN][1000 genomes]
rs13273592	0.87[ASN][1000 genomes]
rs1551393	1.00[ASN][1000 genomes]
rs16900755	0.91[ASN][1000 genomes]
rs2124034	0.88[ASN][1000 genomes]
rs3860846	0.99[ASN][1000 genomes]
rs3860847	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860848	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004902	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7005453	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7009450	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7009673	0.99[ASN][1000 genomes]
rs7826687	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv38	chr8:126593465-126639253	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3887251	ANXA13	cis	parietal	SCAN
rs3887251	TRIB1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126628800-126649400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126632000-126635200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:126632200-126634600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:126632200-126634800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr8:126633400-126633600	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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