Variant report

Variant	rs10956932
Chromosome Location	chr8:95948202-95948203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95943585..95953194-chr8:95954184..95962168,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164938	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10081596	0.81[ASN][1000 genomes]
rs10086284	1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap]
rs10098778	1.00[CHB][hapmap]
rs10099941	1.00[CHB][hapmap]
rs10104909	1.00[CHB][hapmap]
rs10112447	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1011795	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1011796	0.84[CEU][hapmap];0.85[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10441538	0.84[CHB][hapmap]
rs10956928	0.89[CHD][hapmap];0.94[JPT][hapmap]
rs10956929	0.84[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs10956930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10956931	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1129152	0.86[CHB][hapmap]
rs11784717	0.85[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap]
rs11996455	0.86[CHB][hapmap]
rs12541035	0.85[ASN][1000 genomes]
rs12545596	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12548367	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12548999	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12549003	1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12550765	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs12679044	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs13255935	0.85[CHB][hapmap]
rs13257021	0.85[CHB][hapmap]
rs13271375	0.86[CHB][hapmap]
rs1349763	0.81[ASN][1000 genomes]
rs1453377	1.00[CHB][hapmap]
rs1453379	1.00[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs16893776	1.00[CHB][hapmap]
rs2013597	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2123647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2278891	0.84[CEU][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap]
rs2340583	0.89[ASN][1000 genomes]
rs2904893	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2924477	0.80[ASN][1000 genomes]
rs2945554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2945563	0.82[ASN][1000 genomes]
rs2956210	0.85[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2956216	0.85[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3019175	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3019182	0.87[ASN][1000 genomes]
rs34293080	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3802193	1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap]
rs4570121	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4734291	0.87[JPT][hapmap]
rs4734293	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4734294	0.81[ASN][1000 genomes]
rs4734295	0.81[CHB][hapmap]
rs4735328	0.85[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs4735329	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4735330	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735334	0.85[CHB][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4735336	1.00[CHB][hapmap]
rs4735337	1.00[CHB][hapmap]
rs4735339	1.00[CHB][hapmap]
rs477653	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs535322	0.87[ASN][1000 genomes]
rs550418	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs550564	0.88[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs551270	0.85[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs61537129	0.84[ASN][1000 genomes]
rs6471497	0.88[CEU][hapmap]
rs6471499	0.84[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs6471500	0.84[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs6471501	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471503	1.00[CHB][hapmap]
rs6471504	0.86[CHB][hapmap]
rs683832	0.88[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6982393	1.00[CHB][hapmap]
rs6983000	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6987256	0.85[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6987400	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6991067	0.86[CHB][hapmap]
rs6993278	0.82[ASN][1000 genomes]
rs7001535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7004862	0.86[CHB][hapmap]
rs7005317	0.85[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs7015841	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7017487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs726816	0.92[CHB][hapmap]
rs7820818	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7827478	1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7835379	0.81[ASN][1000 genomes]
rs7845219	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs896849	0.80[MKK][hapmap]
rs896850	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs896851	0.92[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs896854	0.85[CHB][hapmap]
rs9643350	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643351	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9643352	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9643353	0.84[CEU][hapmap];0.85[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv891203	chr8:95883232-95948202	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv891204	chr8:95883232-95965135	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10956932	TP53INP1	cis	multi-tissue	Pritchard
rs10956932	INTS8	cis	cerebellum	SCAN
rs10956932	SLC26A7	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95919200-95948600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:95930600-95948600	Weak transcription	Gastric	stomach
3	chr8:95931800-95950000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:95933400-95960600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:95933600-95949600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:95935200-95956400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:95935800-95952000	Weak transcription	NHEK	skin
8	chr8:95936400-95956800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:95937000-95956800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:95937200-95953400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:95937200-95956000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:95937400-95950800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:95938400-95954200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:95938400-95954200	Strong transcription	NHDF-Ad	bronchial
15	chr8:95939000-95954000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:95939800-95948600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:95939800-95950000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:95940600-95951200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:95941600-95953400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr8:95941800-95952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr8:95941800-95953200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:95941800-95953200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr8:95941800-95953200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:95941800-95953800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr8:95942000-95952000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr8:95942000-95953200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:95942000-95953200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:95942200-95953400	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr8:95942800-95948400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:95942800-95948600	Weak transcription	Dnd41	blood
31	chr8:95942800-95948600	Weak transcription	HepG2	liver
32	chr8:95943000-95948400	Weak transcription	Esophagus	oesophagus
33	chr8:95943000-95948400	Weak transcription	Fetal Stomach	stomach
34	chr8:95943000-95948400	Weak transcription	Spleen	Spleen
35	chr8:95943000-95948600	Weak transcription	Ovary	ovary
36	chr8:95943000-95949200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:95943200-95948400	Weak transcription	Brain Angular Gyrus	brain
38	chr8:95943200-95948400	Weak transcription	Psoas Muscle	Psoas
39	chr8:95943200-95948600	Weak transcription	GM12878-XiMat	blood
40	chr8:95943200-95948800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr8:95944200-95953400	Strong transcription	HSMM	muscle
42	chr8:95944600-95948600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr8:95944600-95957000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr8:95944800-95948400	Weak transcription	HUVEC	blood vessel
45	chr8:95944800-95950000	Weak transcription	Fetal Brain Male	brain
46	chr8:95945600-95948400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:95945600-95950400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:95945800-95948400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr8:95946200-95948400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr8:95946600-95952200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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