Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12375371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4386970	0.89[EUR][1000 genomes]
rs67876246	0.89[EUR][1000 genomes]
rs72653671	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72653681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72653682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72653690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72653698	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72653699	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72653700	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72655507	0.94[EUR][1000 genomes]
rs72655510	0.92[EUR][1000 genomes]
rs72655513	0.92[EUR][1000 genomes]
rs7842970	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60217400-60220800	Enhancers	Adipose Nuclei	Adipose
2	chr8:60217800-60221000	Enhancers	Fetal Lung	lung
3	chr8:60218200-60220400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:60218400-60221800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:60218800-60223000	Enhancers	Dnd41	blood
6	chr8:60219000-60221000	Enhancers	Fetal Stomach	stomach
7	chr8:60219000-60221000	Enhancers	HUVEC	blood vessel
8	chr8:60219200-60220600	Weak transcription	Fetal Brain Female	brain
9	chr8:60219200-60220600	Enhancers	Stomach Smooth Muscle	stomach
10	chr8:60219200-60220800	Enhancers	Fetal Brain Male	brain
11	chr8:60219200-60221000	Enhancers	Hela-S3	cervix
12	chr8:60219400-60220800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:60219400-60220800	Enhancers	Colon Smooth Muscle	Colon
14	chr8:60219400-60220800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr8:60219400-60222600	Weak transcription	Brain Germinal Matrix	brain
16	chr8:60219600-60221600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:60220000-60226800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:60220200-60220800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:60220200-60220800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:60220200-60221000	Enhancers	Fetal Heart	heart

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