Variant report
| Variant | rs67876246 |
|---|---|
| Chromosome Location | chr8:60255031-60255032 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10957086 | 0.89[EUR][1000 genomes] |
| rs12375371 | 0.89[EUR][1000 genomes] |
| rs4132140 | 0.80[AMR][1000 genomes] |
| rs4386970 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56791941 | 0.86[AMR][1000 genomes] |
| rs59843391 | 0.86[AMR][1000 genomes] |
| rs6994749 | 0.86[AMR][1000 genomes] |
| rs72653671 | 0.89[EUR][1000 genomes] |
| rs72653681 | 0.94[EUR][1000 genomes] |
| rs72653682 | 0.94[EUR][1000 genomes] |
| rs72653690 | 0.94[EUR][1000 genomes] |
| rs72653698 | 0.94[EUR][1000 genomes] |
| rs72653699 | 0.94[EUR][1000 genomes] |
| rs72653700 | 0.94[EUR][1000 genomes] |
| rs72655507 | 0.94[EUR][1000 genomes] |
| rs72655510 | 0.92[EUR][1000 genomes] |
| rs72655513 | 0.92[EUR][1000 genomes] |
| rs73260059 | 0.86[AMR][1000 genomes] |
| rs73262007 | 0.86[AMR][1000 genomes] |
| rs73262012 | 0.86[AMR][1000 genomes] |
| rs73262023 | 0.83[AMR][1000 genomes] |
| rs7825114 | 0.89[AMR][1000 genomes] |
| rs7842970 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831328 | chr8:60062971-60288276 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv1029441 | chr8:60099776-60539141 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv539629 | chr8:60099776-60539141 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv831329 | chr8:60162977-60356031 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:60253200-60256600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
