Variant report

Variant	rs10957177
Chromosome Location	chr8:61911070-61911071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61909286..61911091-chr8:61912763..61914485,2	K562	blood:
2	chr8:61909390..61914043-chr8:61914275..61917284,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28480198	0.81[AFR][1000 genomes]
rs35695994	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv890948	chr8:61844766-61954970	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020323	chr8:61901412-61941384	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61908800-61911800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:61908800-61912000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:61908800-61912000	Enhancers	Brain Anterior Caudate	brain
4	chr8:61908800-61912000	Enhancers	Brain Hippocampus Middle	brain
5	chr8:61908800-61912200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:61908800-61912600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:61908800-61913000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:61908800-61915400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:61909000-61911800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:61909000-61911800	Enhancers	Fetal Brain Female	brain
11	chr8:61909200-61911400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:61909200-61911400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:61909200-61911400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:61909200-61911400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:61909200-61911400	Enhancers	Primary T cells from cord blood	blood
16	chr8:61909200-61911600	Enhancers	Fetal Brain Male	brain
17	chr8:61909200-61911800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:61909200-61912000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr8:61909200-61912000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:61909200-61912000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr8:61909400-61911400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:61909400-61911800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr8:61909400-61916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:61909600-61912600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr8:61909600-61913800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr8:61909600-61914400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:61909800-61911200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:61909800-61911200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:61909800-61912400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:61909800-61912400	Enhancers	Esophagus	oesophagus
31	chr8:61909800-61912600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr8:61909800-61912600	Enhancers	Fetal Thymus	thymus
33	chr8:61909800-61912600	Enhancers	HMEC	breast
34	chr8:61909800-61913000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr8:61909800-61913000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr8:61909800-61913200	Enhancers	Primary T cells fromperipheralblood	blood
37	chr8:61909800-61913400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr8:61909800-61913600	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr8:61910000-61911200	Enhancers	HSMM	muscle
40	chr8:61910000-61912000	Enhancers	Brain Germinal Matrix	brain
41	chr8:61910000-61912600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr8:61910000-61912600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr8:61910000-61913000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr8:61910000-61919400	Enhancers	Primary B cells from peripheral blood	blood
45	chr8:61910200-61911800	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr8:61910200-61911800	Enhancers	Fetal Heart	heart
47	chr8:61910200-61912400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr8:61910200-61912400	Enhancers	Duodenum Mucosa	Duodenum
49	chr8:61910200-61912400	Enhancers	Spleen	Spleen
50	chr8:61910200-61912600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links