Variant report

Variant	rs35695994
Chromosome Location	chr8:61912812-61912813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61909390..61914043-chr8:61914275..61917284,4	K562	blood:
2	chr8:61909286..61911091-chr8:61912763..61914485,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10089780	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10095243	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10098608	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10957177	0.82[AFR][1000 genomes]
rs12335283	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13261682	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16926675	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28480198	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28625476	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs716683	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv890948	chr8:61844766-61954970	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020323	chr8:61901412-61941384	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61908800-61913000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:61908800-61915400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:61909400-61916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:61909600-61913800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:61909600-61914400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:61909800-61913000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr8:61909800-61913000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr8:61909800-61913200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr8:61909800-61913400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr8:61909800-61913600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr8:61910000-61913000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:61910000-61919400	Enhancers	Primary B cells from peripheral blood	blood
13	chr8:61910200-61913200	Enhancers	Primary B cells from cord blood	blood
14	chr8:61910200-61913400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr8:61910400-61913200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr8:61910400-61916800	Weak transcription	Right Atrium	heart
17	chr8:61910600-61913000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr8:61910600-61913000	Enhancers	Thymus	Thymus
19	chr8:61910800-61916600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:61911200-61916800	Weak transcription	Fetal Lung	lung
21	chr8:61911400-61916400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:61911400-61916600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:61911400-61916800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:61911800-61913600	Enhancers	Primary T cells from cord blood	blood
25	chr8:61911800-61913800	Weak transcription	Fetal Heart	heart
26	chr8:61911800-61916200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:61911800-61916400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:61911800-61916600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:61911800-61916800	Weak transcription	Liver	Liver
30	chr8:61911800-61916800	Weak transcription	Colonic Mucosa	Colon
31	chr8:61911800-61916800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr8:61911800-61916800	Weak transcription	Placenta	Placenta
33	chr8:61911800-61916800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:61911800-61917000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:61911800-61923600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:61912000-61913600	Weak transcription	Brain Germinal Matrix	brain
37	chr8:61912000-61916200	Weak transcription	Brain Anterior Caudate	brain
38	chr8:61912000-61916200	Weak transcription	Brain Hippocampus Middle	brain
39	chr8:61912000-61916400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr8:61912000-61916600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:61912000-61916800	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:61912000-61917000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr8:61912400-61913200	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr8:61912400-61913200	Enhancers	GM12878-XiMat	blood
45	chr8:61912400-61916400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr8:61912400-61916800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:61912400-61916800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr8:61912400-61916800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr8:61912400-61917000	Weak transcription	Spleen	Spleen
50	chr8:61912600-61913000	Weak transcription	Rectal Mucosa Donor 29	rectum

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