Variant report

Variant	rs10089780
Chromosome Location	chr8:61919712-61919713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61916700..61920504-chr8:61923815..61926099,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10086776	0.82[AMR][1000 genomes]
rs10095243	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098608	0.88[ASN][1000 genomes]
rs12335283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261682	0.88[ASN][1000 genomes]
rs16926675	0.88[ASN][1000 genomes]
rs28480198	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28625476	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35695994	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv890948	chr8:61844766-61954970	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020323	chr8:61901412-61941384	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61911800-61923600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:61915200-61920400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:61915200-61920600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr8:61915400-61920400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:61916800-61920800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:61917200-61925000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:61917400-61919800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:61917400-61920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:61917400-61920200	Weak transcription	Left Ventricle	heart
10	chr8:61917400-61920600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:61917400-61920800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr8:61917400-61924400	Weak transcription	Spleen	Spleen
13	chr8:61917400-61924800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:61917600-61920200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr8:61917600-61920400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:61917600-61920600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr8:61917600-61925000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:61917800-61920200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:61917800-61920400	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr8:61917800-61920800	Enhancers	Primary T cells from cord blood	blood
21	chr8:61917800-61925400	Weak transcription	Right Atrium	heart
22	chr8:61918000-61922200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr8:61918000-61924600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:61918000-61925000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:61918200-61920000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:61918400-61920200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr8:61918400-61920800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr8:61918400-61924600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:61918600-61919800	Enhancers	Fetal Kidney	kidney
30	chr8:61918600-61924400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:61918800-61920000	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:61918800-61920600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:61919000-61920000	Weak transcription	Fetal Thymus	thymus
34	chr8:61919000-61920800	Enhancers	Fetal Brain Female	brain
35	chr8:61919000-61924600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:61919200-61920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:61919200-61920200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr8:61919200-61920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:61919200-61920600	Enhancers	Fetal Brain Male	brain
40	chr8:61919200-61921400	Enhancers	Brain Germinal Matrix	brain
41	chr8:61919200-61924400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr8:61919200-61924600	Weak transcription	Brain Angular Gyrus	brain
43	chr8:61919200-61924600	Weak transcription	Brain Anterior Caudate	brain
44	chr8:61919400-61920000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr8:61919400-61920600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr8:61919400-61922000	Weak transcription	Primary B cells from cord blood	blood
47	chr8:61919400-61922200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr8:61919400-61924400	Weak transcription	Brain Hippocampus Middle	brain
49	chr8:61919400-61925000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr8:61919400-61925000	Weak transcription	Brain Substantia Nigra	brain

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