Variant report

Variant	rs10086776
Chromosome Location	chr8:61874498-61874499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61873753..61875664-chr8:61875994..61878043,2	MCF-7	breast:
2	chr8:61865655..61871190-chr8:61872116..61876156,6	K562	blood:
3	chr8:61873885..61874676-chr8:62008576..62009223,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10089780	0.82[AMR][1000 genomes]
rs10104895	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10109249	0.86[ASN][1000 genomes]
rs10110018	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11985124	0.91[ASN][1000 genomes]
rs11988513	0.91[ASN][1000 genomes]
rs12335258	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12335283	0.82[AMR][1000 genomes]
rs28583647	0.91[ASN][1000 genomes]
rs28688155	0.91[ASN][1000 genomes]
rs6987075	0.91[ASN][1000 genomes]
rs6990915	0.91[ASN][1000 genomes]
rs7001966	0.88[ASN][1000 genomes]
rs72652592	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9692725	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890947	chr8:61815886-61882751	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv890948	chr8:61844766-61954970	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2764117	chr8:61858213-61879683	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61862800-61879200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:61862800-61879600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:61864000-61884400	Weak transcription	Primary T cells from cord blood	blood
4	chr8:61868200-61877600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:61868200-61878200	Weak transcription	Primary B cells from cord blood	blood
6	chr8:61869200-61879800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:61869400-61877800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:61871600-61878800	Weak transcription	GM12878-XiMat	blood
9	chr8:61872800-61874600	Enhancers	Fetal Intestine Large	intestine
10	chr8:61873000-61875000	Enhancers	Fetal Intestine Small	intestine
11	chr8:61873600-61874600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:61873600-61874600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:61873600-61874600	Enhancers	Fetal Heart	heart
14	chr8:61873600-61874600	Enhancers	Fetal Muscle Trunk	muscle
15	chr8:61873600-61874600	Enhancers	Left Ventricle	heart
16	chr8:61873600-61874600	Flanking Active TSS	HepG2	liver
17	chr8:61873600-61874600	Enhancers	NHLF	lung
18	chr8:61873600-61875200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:61873600-61878400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:61873600-61879000	Enhancers	Fetal Muscle Leg	muscle
21	chr8:61873800-61874600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr8:61873800-61874600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:61873800-61874600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:61873800-61874600	Enhancers	NHDF-Ad	bronchial
25	chr8:61873800-61874600	Enhancers	Osteobl	bone
26	chr8:61873800-61878400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:61874000-61874600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:61874000-61875200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr8:61874000-61875800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr8:61874000-61876600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr8:61874200-61874600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr8:61874200-61874600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr8:61874200-61874600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr8:61874200-61874600	Enhancers	Fetal Kidney	kidney
35	chr8:61874200-61875200	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr8:61874200-61875800	Weak transcription	HSMM	muscle
37	chr8:61874200-61876200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr8:61874400-61874600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
39	chr8:61874400-61875800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr8:61874400-61876200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr8:61874400-61876600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr8:61874400-61876800	Weak transcription	Fetal Lung	lung
43	chr8:61874400-61877600	Weak transcription	Brain Hippocampus Middle	brain

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