Variant report

Variant	rs10098608
Chromosome Location	chr8:61909462-61909463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61909286..61911091-chr8:61912763..61914485,2	K562	blood:
2	chr8:61909390..61914043-chr8:61914275..61917284,4	K562	blood:
3	chr8:61903857..61905695-chr8:61908821..61910338,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10089780	0.88[ASN][1000 genomes]
rs10095243	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12335283	0.88[ASN][1000 genomes]
rs13261682	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480198	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625476	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35695994	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs716683	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9692725	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9693558	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv890948	chr8:61844766-61954970	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020323	chr8:61901412-61941384	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61896400-61909800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:61905600-61909800	Weak transcription	Fetal Thymus	thymus
3	chr8:61906000-61909600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:61906400-61909800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:61906400-61909800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr8:61906400-61910000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:61906400-61910200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:61906600-61909600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr8:61906600-61909800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:61906800-61909600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:61906800-61909800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr8:61906800-61909800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr8:61906800-61910200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:61906800-61910200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:61907000-61909800	Weak transcription	GM12878-XiMat	blood
16	chr8:61907000-61910000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:61907200-61910200	Weak transcription	Primary B cells from cord blood	blood
18	chr8:61907400-61910000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr8:61908800-61910800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr8:61908800-61910800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr8:61908800-61911800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:61908800-61912000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:61908800-61912000	Enhancers	Brain Anterior Caudate	brain
24	chr8:61908800-61912000	Enhancers	Brain Hippocampus Middle	brain
25	chr8:61908800-61912200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:61908800-61912600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr8:61908800-61913000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:61908800-61915400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:61909000-61909600	Enhancers	Brain Germinal Matrix	brain
30	chr8:61909000-61911800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:61909000-61911800	Enhancers	Fetal Brain Female	brain
32	chr8:61909200-61911400	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr8:61909200-61911400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:61909200-61911400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr8:61909200-61911400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr8:61909200-61911400	Enhancers	Primary T cells from cord blood	blood
37	chr8:61909200-61911600	Enhancers	Fetal Brain Male	brain
38	chr8:61909200-61911800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr8:61909200-61912000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr8:61909200-61912000	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr8:61909200-61912000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr8:61909400-61910200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr8:61909400-61911400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr8:61909400-61911800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr8:61909400-61916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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