Variant report

Variant	rs10957633
Chromosome Location	chr8:50729405-50729406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11786785	0.93[AFR][1000 genomes]
rs12543434	0.84[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs13271446	0.85[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1385979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486247	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50727200-50732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:50728400-50730000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:50728400-50730000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:50728400-50730200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:50728400-50731200	Enhancers	HMEC	breast
6	chr8:50728600-50729800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:50728600-50729800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:50728600-50731000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:50728600-50731000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:50728600-50731400	Enhancers	Hela-S3	cervix
11	chr8:50728600-50731400	Enhancers	NHDF-Ad	bronchial
12	chr8:50728800-50730000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:50729000-50729800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:50729000-50730000	Enhancers	NH-A	brain
15	chr8:50729200-50729600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:50729200-50729800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr8:50729200-50729800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr8:50729200-50729800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:50729200-50729800	Enhancers	NHEK	skin
20	chr8:50729200-50730000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:50729400-50729600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr8:50729400-50729800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:50729400-50730200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:50729400-50731000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:50729400-50731000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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