Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10112818	0.88[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs10504093	0.88[JPT][hapmap]
rs10957633	0.93[AFR][1000 genomes]
rs10957710	0.82[JPT][hapmap]
rs1157932	0.88[JPT][hapmap]
rs12543434	1.00[YRI][hapmap]
rs13264385	0.88[JPT][hapmap]
rs13266009	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs13271446	1.00[YRI][hapmap]
rs1385976	0.83[ASN][1000 genomes]
rs1385979	0.93[AFR][1000 genomes]
rs1486247	1.00[YRI][hapmap]
rs1486258	0.88[JPT][hapmap]
rs1552380	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17676043	0.84[ASN][1000 genomes]
rs17676077	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2170953	0.88[JPT][hapmap]
rs2385548	0.81[ASN][1000 genomes]
rs2385554	0.88[JPT][hapmap]
rs2385696	0.88[JPT][hapmap]
rs2385697	0.88[JPT][hapmap]
rs318851	0.88[JPT][hapmap]
rs318853	0.88[JPT][hapmap]
rs36160411	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3812426	0.88[JPT][hapmap]
rs4460388	0.88[JPT][hapmap]
rs4873120	0.87[JPT][hapmap]
rs6991925	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs923060	0.88[JPT][hapmap]
rs931293	0.82[JPT][hapmap]
rs9643689	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3342385	chr8:50751979-50752279	Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11786785	SNTG1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50748400-50752400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:50748600-50754000	Weak transcription	Liver	Liver
3	chr8:50750600-50755200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:50751600-50755000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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