Variant report

Variant	rs1157932
Chromosome Location	chr8:50867957-50867958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10096242	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10112215	0.87[JPT][hapmap]
rs10112818	0.88[JPT][hapmap]
rs1023979	0.82[JPT][hapmap]
rs10504093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957679	0.91[EUR][1000 genomes]
rs10957681	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10957682	0.91[EUR][1000 genomes]
rs10957739	0.81[JPT][hapmap]
rs10957741	0.82[JPT][hapmap]
rs11773979	0.99[ASN][1000 genomes]
rs11776388	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11777957	1.00[CEU][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11778027	0.96[EUR][1000 genomes]
rs11781675	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs11782772	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11783503	1.00[CEU][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes]
rs11783607	0.93[AMR][1000 genomes]
rs11783631	1.00[CEU][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes]
rs11784278	0.96[EUR][1000 genomes]
rs11784738	0.96[EUR][1000 genomes]
rs11786880	1.00[EUR][1000 genomes]
rs11787050	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12541363	0.87[JPT][hapmap]
rs12542536	0.82[EUR][1000 genomes]
rs12545695	0.92[EUR][1000 genomes]
rs12547245	1.00[EUR][1000 genomes]
rs13264385	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13267366	0.86[CHB][hapmap]
rs13273334	0.82[JPT][hapmap]
rs1344326	1.00[CEU][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes]
rs1352114	0.82[JPT][hapmap]
rs1385980	0.92[EUR][1000 genomes]
rs1484805	0.82[JPT][hapmap]
rs1486258	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1486263	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1552377	1.00[EUR][1000 genomes]
rs1552379	0.92[EUR][1000 genomes]
rs1552380	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1586364	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16913687	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16914039	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs170331	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1843607	0.92[ASN][1000 genomes]
rs2015043	0.87[JPT][hapmap]
rs2086888	0.81[JPT][hapmap]
rs2129161	0.88[JPT][hapmap]
rs2129169	0.88[JPT][hapmap]
rs2170953	0.88[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2220157	0.88[JPT][hapmap]
rs2247368	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2385554	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2385696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385697	0.88[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2449960	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2449961	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2449963	0.81[JPT][hapmap]
rs2450286	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2450287	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2450290	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28869911	0.83[ASN][1000 genomes]
rs318850	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs318851	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs318853	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs318854	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs318858	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs318859	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs318861	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs318867	0.82[JPT][hapmap]
rs318874	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs318913	0.81[JPT][hapmap]
rs379601	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3812426	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs404309	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs412929	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4242456	1.00[CEU][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes]
rs4460388	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs451034	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs453906	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4634657	0.91[EUR][1000 genomes]
rs4873118	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873119	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873121	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4873123	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4873392	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873401	0.96[EUR][1000 genomes]
rs55780592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55879210	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56040457	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59240550	0.96[EUR][1000 genomes]
rs59679832	0.96[EUR][1000 genomes]
rs6472721	0.86[CHB][hapmap]
rs6472838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472839	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6984738	0.81[ASN][1000 genomes]
rs6988440	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6991925	0.89[JPT][hapmap]
rs7002291	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7002909	0.81[ASN][1000 genomes]
rs7003221	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7004973	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7008449	0.92[EUR][1000 genomes]
rs7010915	0.87[JPT][hapmap]
rs7014520	0.87[JPT][hapmap]
rs73676077	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7388392	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7828900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7833377	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs923058	0.82[JPT][hapmap]
rs923060	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs931293	0.88[JPT][hapmap]
rs931294	0.88[JPT][hapmap]
rs9643685	0.99[ASN][1000 genomes]
rs9643689	0.81[JPT][hapmap]
rs9643692	0.81[JPT][hapmap]
rs967107	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs971926	0.87[JPT][hapmap]
rs974740	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs974742	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs993553	0.88[JPT][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1022115	chr8:50864995-50981944	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv611311	chr8:50865230-50980320	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50855200-50875200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:50858400-50870200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:50858400-50871600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:50860400-50875400	Weak transcription	Fetal Intestine Small	intestine
5	chr8:50865800-50868000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:50865800-50869200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:50866000-50868600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:50866200-50868200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:50866200-50868400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:50866200-50868600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:50866200-50868600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:50866600-50868400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:50867800-50868000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:50867800-50868000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:50867800-50868000	Enhancers	Brain Cingulate Gyrus	brain
16	chr8:50867800-50868200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:50867800-50868200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:50867800-50868200	Enhancers	Brain Substantia Nigra	brain
19	chr8:50867800-50868400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr8:50867800-50868400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:50867800-50868400	Enhancers	Brain Anterior Caudate	brain
22	chr8:50867800-50868400	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr8:50867800-50868400	Enhancers	HMEC	breast
24	chr8:50867800-50868600	Enhancers	Brain Germinal Matrix	brain
25	chr8:50867800-50869200	Enhancers	H1 Cell Line	embryonic stem cell

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