Variant report
Variant | rs12547245 |
---|---|
Chromosome Location | chr8:50787809-50787810 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10086004 | 0.97[ASN][1000 genomes] |
rs10089399 | 0.97[ASN][1000 genomes] |
rs10090657 | 0.97[ASN][1000 genomes] |
rs10092384 | 0.97[ASN][1000 genomes] |
rs10096242 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10107423 | 0.97[ASN][1000 genomes] |
rs10111730 | 0.97[ASN][1000 genomes] |
rs1038534 | 0.97[ASN][1000 genomes] |
rs10504093 | 1.00[EUR][1000 genomes] |
rs1074385 | 0.97[ASN][1000 genomes] |
rs10957620 | 0.97[ASN][1000 genomes] |
rs10957679 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10957681 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10957682 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1157932 | 1.00[EUR][1000 genomes] |
rs11776388 | 0.96[EUR][1000 genomes] |
rs11777957 | 0.96[EUR][1000 genomes] |
rs11778027 | 0.96[EUR][1000 genomes] |
rs11781675 | 0.83[ASN][1000 genomes] |
rs11782772 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11783503 | 0.96[EUR][1000 genomes] |
rs11783631 | 0.96[EUR][1000 genomes] |
rs11784278 | 0.96[EUR][1000 genomes] |
rs11784738 | 0.96[EUR][1000 genomes] |
rs11785147 | 0.97[ASN][1000 genomes] |
rs11786880 | 1.00[EUR][1000 genomes] |
rs11786939 | 0.97[ASN][1000 genomes] |
rs11787050 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12542041 | 0.94[ASN][1000 genomes] |
rs12542536 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12542687 | 0.82[ASN][1000 genomes] |
rs12545695 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12677051 | 0.97[ASN][1000 genomes] |
rs13251355 | 0.97[ASN][1000 genomes] |
rs13255117 | 0.97[ASN][1000 genomes] |
rs13261298 | 0.97[ASN][1000 genomes] |
rs13267366 | 0.97[ASN][1000 genomes] |
rs1344326 | 0.96[EUR][1000 genomes] |
rs1352112 | 0.97[ASN][1000 genomes] |
rs1352113 | 0.84[ASN][1000 genomes] |
rs1385974 | 0.97[ASN][1000 genomes] |
rs1385975 | 0.97[ASN][1000 genomes] |
rs1385976 | 0.85[ASN][1000 genomes] |
rs1385980 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1385982 | 0.97[ASN][1000 genomes] |
rs1486241 | 0.97[ASN][1000 genomes] |
rs1486242 | 0.97[ASN][1000 genomes] |
rs1486243 | 0.97[ASN][1000 genomes] |
rs1486251 | 0.97[ASN][1000 genomes] |
rs1486252 | 0.97[ASN][1000 genomes] |
rs1486253 | 0.97[ASN][1000 genomes] |
rs1486254 | 0.97[ASN][1000 genomes] |
rs1486263 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1552371 | 0.84[ASN][1000 genomes] |
rs1552372 | 0.97[ASN][1000 genomes] |
rs1552373 | 0.97[ASN][1000 genomes] |
rs1552375 | 0.95[ASN][1000 genomes] |
rs1552377 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1552378 | 0.87[ASN][1000 genomes] |
rs1552379 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1580468 | 0.97[ASN][1000 genomes] |
rs1586364 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1601569 | 0.97[ASN][1000 genomes] |
rs16912794 | 0.97[ASN][1000 genomes] |
rs16913087 | 0.97[ASN][1000 genomes] |
rs16913172 | 0.93[ASN][1000 genomes] |
rs16913461 | 0.97[ASN][1000 genomes] |
rs16913472 | 0.97[ASN][1000 genomes] |
rs16913475 | 0.97[ASN][1000 genomes] |
rs16913687 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs16914039 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs170331 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1906014 | 0.81[ASN][1000 genomes] |
rs1906015 | 0.91[ASN][1000 genomes] |
rs1979535 | 0.97[ASN][1000 genomes] |
rs1994344 | 0.97[ASN][1000 genomes] |
rs2129162 | 0.97[ASN][1000 genomes] |
rs2129164 | 0.97[ASN][1000 genomes] |
rs2129165 | 0.93[ASN][1000 genomes] |
rs2247368 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2385545 | 0.97[ASN][1000 genomes] |
rs2385546 | 0.97[ASN][1000 genomes] |
rs2385547 | 0.97[ASN][1000 genomes] |
rs2385548 | 0.85[ASN][1000 genomes] |
rs2385696 | 1.00[EUR][1000 genomes] |
rs2449960 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2449961 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs2449962 | 1.00[AMR][1000 genomes] |
rs2450286 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2450287 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2450290 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2628420 | 0.97[AMR][1000 genomes] |
rs28869911 | 0.85[ASN][1000 genomes] |
rs318850 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs318851 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs318853 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs318854 | 0.97[AMR][1000 genomes] |
rs318858 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs318859 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs318861 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs318874 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs379601 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs404309 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs404686 | 0.90[AMR][1000 genomes] |
rs412929 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4242456 | 0.96[EUR][1000 genomes] |
rs4339657 | 0.95[ASN][1000 genomes] |
rs4383988 | 0.97[ASN][1000 genomes] |
rs451034 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs453906 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs4584153 | 0.97[ASN][1000 genomes] |
rs4634657 | 0.91[EUR][1000 genomes] |
rs4873113 | 0.97[ASN][1000 genomes] |
rs4873114 | 0.97[ASN][1000 genomes] |
rs4873116 | 0.97[ASN][1000 genomes] |
rs4873118 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4873119 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4873120 | 1.00[EUR][1000 genomes] |
rs4873121 | 0.96[EUR][1000 genomes] |
rs4873379 | 0.81[ASN][1000 genomes] |
rs4873382 | 0.95[ASN][1000 genomes] |
rs4873383 | 0.97[ASN][1000 genomes] |
rs4873388 | 0.97[ASN][1000 genomes] |
rs4873391 | 0.97[ASN][1000 genomes] |
rs4873392 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4873401 | 0.96[EUR][1000 genomes] |
rs55636909 | 0.95[ASN][1000 genomes] |
rs55780592 | 1.00[EUR][1000 genomes] |
rs55879210 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs56040457 | 0.91[EUR][1000 genomes] |
rs56659775 | 0.97[ASN][1000 genomes] |
rs57462717 | 0.97[ASN][1000 genomes] |
rs58764084 | 0.97[ASN][1000 genomes] |
rs59240550 | 0.96[EUR][1000 genomes] |
rs59379959 | 0.97[ASN][1000 genomes] |
rs59679832 | 0.96[EUR][1000 genomes] |
rs59848488 | 0.97[ASN][1000 genomes] |
rs60213702 | 0.97[ASN][1000 genomes] |
rs60631955 | 0.97[ASN][1000 genomes] |
rs61662535 | 0.97[ASN][1000 genomes] |
rs6472721 | 0.97[ASN][1000 genomes] |
rs6472838 | 1.00[EUR][1000 genomes] |
rs6472839 | 0.92[EUR][1000 genomes] |
rs6988440 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6994224 | 0.97[ASN][1000 genomes] |
rs7002291 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7003221 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7003721 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs7004973 | 0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7008449 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7008924 | 0.95[ASN][1000 genomes] |
rs7013903 | 0.97[ASN][1000 genomes] |
rs73582706 | 0.97[ASN][1000 genomes] |
rs73582713 | 0.97[ASN][1000 genomes] |
rs73582718 | 0.95[ASN][1000 genomes] |
rs73582724 | 0.97[ASN][1000 genomes] |
rs73582755 | 0.97[ASN][1000 genomes] |
rs73582756 | 0.97[ASN][1000 genomes] |
rs73676017 | 0.91[ASN][1000 genomes] |
rs73676077 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7388392 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7388394 | 0.81[ASN][1000 genomes] |
rs7825552 | 0.97[ASN][1000 genomes] |
rs7826013 | 0.94[ASN][1000 genomes] |
rs7828311 | 0.97[ASN][1000 genomes] |
rs7828900 | 1.00[EUR][1000 genomes] |
rs9298228 | 0.97[ASN][1000 genomes] |
rs9298229 | 0.97[ASN][1000 genomes] |
rs964011 | 0.97[ASN][1000 genomes] |
rs967107 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs974740 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs974742 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs9886451 | 0.97[ASN][1000 genomes] |
rs993553 | 0.96[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3353749 | chr8:50530807-51139242 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:50787800-50790000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |